Merge pull request #270 from monarch-initiative/flybase-pubs-22316

check for pmid prefix in flybase
monarch-initiative · Feb 24, 2016 · ab47e5d · ab47e5d
2 parents fcfa92b + 230a6f2
commit ab47e5d
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/dipper/sources/FlyBase.py b/dipper/sources/FlyBase.py
@@ -813,7 +813,10 @@ def _process_pub_dbxref(self, limit):
                     for d in dbxrefs:
                         dbxref_id = None
                         if int(d) in pmid_ids:
-                            dbxref_id = 'PMID:'+dbxrefs[d].strip()
+                            if re.match(r'^PMID', dbxrefs[d]):
+                                dbxref_id = dbxrefs[d].strip()
+                            else:
+                                dbxref_id = 'PMID:'+dbxrefs[d].strip()
                             gu.makeLeader(g, dbxref_id)
                         elif int(d) in isbn:
                             dbxref_id = 'ISBN:'+dbxrefs[d].strip()