add var for additional column

monarch-initiative · May 8, 2016 · ac5c956 · ac5c956
1 parent cd5b1d3
commit ac5c956
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/dipper/curie_map.yaml b/dipper/curie_map.yaml
@@ -135,7 +135,7 @@
 'dictyBase' : 'http://dictybase.org/gene/'
 'EcoGene' : 'http://ecogene.org/gene/'
 'ENSEMBL' : 'http://identifiers.org/ensembl/'
-'FlyBase' : 'http://identifiers.org/FB:'  # also variants, pubs, genotypes, strains
+'FlyBase' : 'http://flybase.org/reports/'  # also variants, pubs, genotypes, strains
 'GenBank' : 'http://www.ncbi.nlm.nih.gov/nuccore/'
 'HGNC' : 'http://identifiers.org/hgnc/HGNC:'
 'IMPC' : 'http://www.mousephenotype.org/data/genes/'  # FIXME

diff --git a/dipper/sources/FlyBase.py b/dipper/sources/FlyBase.py
@@ -1859,7 +1859,7 @@ def _process_organism_dbxref(self, limit):
             filereader = csv.reader(f, delimiter='\t', quotechar='\"')
             for line in filereader:
 
-                (organism_dbxref_id, organism_id, dbxref_id) = line
+                (organism_dbxref_id, organism_id, dbxref_id, is_current) = line
 
                 if self.testMode and\
                         int(organism_id) not in self.test_keys['organism']: