Fix taxon name colliding with genotype names in search #983
Workflow file for this run
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| name: Test Backend | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| # defaults: | |
| # run: | |
| # working-directory: ./backend | |
| jobs: | |
| test-backend: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| os: [ubuntu-latest] | |
| #os: [ ubuntu-latest, windows-latest ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| #---------------------------------------------- | |
| # install & configure poetry | |
| #---------------------------------------------- | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| #---------------------------------------------- | |
| # install your root project, if required | |
| #---------------------------------------------- | |
| - name: Install library | |
| run: poetry -C backend install --no-interaction | |
| #---------------------------------------------- | |
| # run pytest | |
| #---------------------------------------------- | |
| - name: Run tests | |
| run: poetry -C backend run pytest backend/tests | |
| #---------------------------------------------- | |
| # coverage report | |
| #---------------------------------------------- | |
| - name: Generate coverage results | |
| run: | | |
| poetry -C backend run coverage run -m pytest backend/tests | |
| poetry -C backend run coverage xml | |
| poetry -C backend run coverage report -m | |
| shell: bash | |
| #---------------------------------------------- | |
| # upload coverage results | |
| #---------------------------------------------- | |
| - name: Upload coverage report | |
| if: github.repository == 'monarch-initiative/monarch-app' | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| name: codecov-results-${{ matrix.python-version }} | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| fail_ci_if_error: true | |