update tests, generate fixtures again

monarch-initiative · Jun 3, 2024 · d5ca215 · d5ca215
1 parent 4baeb94
commit d5ca215
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Showing 11 changed files with 149 additions and 146 deletions.
diff --git a/backend/src/monarch_py/utils/association_type_mappings.yaml b/backend/src/monarch_py/utils/association_type_mappings.yaml
@@ -1,5 +1,5 @@
 - subject_label: Disease to Phenotype
-  object_label: Phenotype from Disease
+  object_label: Phenotype to Disease
   category: "biolink:DiseaseToPhenotypicFeatureAssociation"
 - subject_label: Gene to Phenotype
   object_label: Phenotype to Gene

diff --git a/backend/tests/fixtures/association_counts.py b/backend/tests/fixtures/association_counts.py
@@ -6,7 +6,7 @@ def association_counts():
     return {
         "items": [
             {
-                "label": "Phenotype from Disease",
+                "label": "Phenotype to Disease",
                 "count": 3932,
                 "category": "biolink:DiseaseToPhenotypicFeatureAssociation",
             },

diff --git a/backend/tests/fixtures/association_counts_response.py b/backend/tests/fixtures/association_counts_response.py
@@ -5,7 +5,7 @@
 def association_counts_response():
     return {
         "responseHeader": {
-            "QTime": 0,
+            "QTime": 1,
             "params": {
                 "facet.query": [
                     '(category:"biolink:DiseaseToPhenotypicFeatureAssociation") AND (subject:"MONDO:0020121" OR subject_closure:"MONDO:0020121")',

diff --git a/backend/tests/fixtures/node.py b/backend/tests/fixtures/node.py
@@ -67,7 +67,7 @@ def node():
         },
         "association_counts": [
             {
-                "label": "Phenotype from Disease",
+                "label": "Phenotype to Disease",
                 "count": 3932,
                 "category": "biolink:DiseaseToPhenotypicFeatureAssociation",
             },

diff --git a/backend/tests/fixtures/object_formatted.py b/backend/tests/fixtures/object_formatted.py
diff --git a/backend/tests/integration/test_solr_search.py b/backend/tests/integration/test_solr_search.py
@@ -109,12 +109,12 @@ def test_association_counts_for_disease():
     assert len(association_counts.items) > 0
 
     causal_genes = [ac for ac in association_counts.items if ac.category == "biolink:CausalGeneToDiseaseAssociation"][0]
-    assert causal_genes.label == "Causal Genes"
+    assert causal_genes.label == "Causal Gene"
 
     disease_phenotype = [
         ac for ac in association_counts.items if ac.category == "biolink:DiseaseToPhenotypicFeatureAssociation"
     ][0]
-    assert disease_phenotype.label == "Phenotypes"
+    assert disease_phenotype.label == "Phenotype to Disease"
 
 
 def test_association_counts_for_eds():
@@ -133,12 +133,12 @@ def test_association_counts_for_phenotype():
     disease_phenotype = [
         ac for ac in association_counts.items if ac.category == "biolink:DiseaseToPhenotypicFeatureAssociation"
     ][0]
-    assert disease_phenotype.label == "Diseases"
+    assert disease_phenotype.label == "Disease to Phenotype"
 
     gene_phenotype = [
         ac for ac in association_counts.items if ac.category == "biolink:GeneToPhenotypicFeatureAssociation"
     ][0]
-    assert gene_phenotype.label == "Genes"
+    assert gene_phenotype.label == "Gene to Phenotype"
 
 
 def test_association_table():

diff --git a/backend/tests/unit/test_solr_queries.py b/backend/tests/unit/test_solr_queries.py
@@ -83,7 +83,7 @@ def test_build_association_multiple_entites():
     entity_filter = [fq for fq in query.filter_queries if fq.startswith("subject:")][0]
     assert (
         entity_filter
-        == 'subject:"MONDO\\:0020121" OR subject_closure:"MONDO\\:0020121" OR object:"MONDO\\:0020121" OR object_closure:"MONDO\\:0020121" OR subject:"HP\\:0000006" OR subject_closure:"HP\\:0000006" OR object:"HP\\:0000006" OR object_closure:"HP\\:0000006"'
+        == 'subject:"MONDO:0020121" OR subject_closure:"MONDO:0020121" OR object:"MONDO:0020121" OR object_closure:"MONDO:0020121" OR subject:"HP:0000006" OR subject_closure:"HP:0000006" OR object:"HP:0000006" OR object_closure:"HP:0000006"'
     )
 
 

diff --git a/frontend/fixtures/association-counts.json b/frontend/fixtures/association-counts.json
@@ -1,7 +1,7 @@
 {
   "items": [
     {
-      "label": "Phenotype from Disease",
+      "label": "Phenotype to Disease",
       "count": 3932,
       "category": "biolink:DiseaseToPhenotypicFeatureAssociation"
     },

diff --git a/frontend/fixtures/node.json b/frontend/fixtures/node.json
@@ -116,7 +116,7 @@
   },
   "association_counts": [
     {
-      "label": "Phenotype from Disease",
+      "label": "Phenotype to Disease",
       "count": 3932,
       "category": "biolink:DiseaseToPhenotypicFeatureAssociation"
     },