EFO diseases

[nlwashington]

it seems EFO has disease identifiers, like eye diseases. we need to be able to bridge these, so we can use the gwas data they've curated.

[mellybelly]

yet another disease ontology!

On Oct 28, 2015, at 5:39 PM, Nicole Washington <notifications@github.commailto:notifications@github.com> wrote:

it seems EFO has disease identifiers, like eye diseaseshttp://www.ebi.ac.uk/efo/EFO_0003966. we need to be able to bridge these, so we can use the gwas data they've curated.

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/57.

Dr. Melissa Haendel

Associate Professor
Ontology Development Group, OHSU Library
www.ohsu.edu/library/ontologyhttp://www.ohsu.edu/library/ontology
Department of Medical Informatics and Clinical Epidemiology
Oregon Health & Science University
haendel@ohsu.edumailto:haendel@ohsu.edu
skype: melissa.haendel
503-407-5970

[pnrobinson]

Hi everybody,
I know Helen pretty well and I think the EFO has disease terms out of necessity, i.e., there is/was no other option that would make the EBI resources do what they should do. We should try to synergise with respect to diseases in the future!
-Peter

Dr. med. Peter N. Robinson, MSc.
Professor of Medical Genomics
Professor of Bioinformatics, Freie Universität Berlin
Institut für Medizinische Genetik und Humangenetik
Charité - Universitätsmedizin Berlin
Augustenburger Platz 1
13353 Berlin
Germany
+4930 450566006
Mobile: 0160 93769872
peter.robinson@charite.de
http://compbio.charite.de
http://www.human-phenotype-ontology.org
I have learned from my mistakes, and I am sure I can repeat them exactly
ORCID ID:http://orcid.org/0000-0002-0736-9199
Scopus Author ID 7403719646
Appointment request: http://doodle.com/pnrobinson

---

Von: Melissa Haendel [notifications@github.com]
Gesendet: Donnerstag, 29. Oktober 2015 01:56
An: monarch-initiative/monarch-disease-ontology
Betreff: Re: [monarch-disease-ontology] EFO diseases (#57)

yet another disease ontology!

On Oct 28, 2015, at 5:39 PM, Nicole Washington <notifications@github.commailto:notifications@github.com> wrote:

it seems EFO has disease identifiers, like eye diseaseshttp://www.ebi.ac.uk/efo/EFO_0003966. we need to be able to bridge these, so we can use the gwas data they've curated.

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/57.

Dr. Melissa Haendel

Associate Professor
Ontology Development Group, OHSU Library
www.ohsu.edu/library/ontologyhttp://www.ohsu.edu/library/ontology
Department of Medical Informatics and Clinical Epidemiology
Oregon Health & Science University
haendel@ohsu.edumailto:haendel@ohsu.edu
skype: melissa.haendel
503-407-5970

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/57#issuecomment-152043504.

[mellybelly]

Oh its no worry, we work well with EFO:-)

On Oct 28, 2015, at 11:12 PM, Peter Robinson <notifications@github.commailto:notifications@github.com> wrote:

Hi everybody,
I know Helen pretty well and I think the EFO has disease terms out of necessity, i.e., there is/was no other option that would make the EBI resources do what they should do. We should try to synergise with respect to diseases in the future!
-Peter

Dr. med. Peter N. Robinson, MSc.
Professor of Medical Genomics
Professor of Bioinformatics, Freie Universität Berlin
Institut für Medizinische Genetik und Humangenetik
Charité - Universitätsmedizin Berlin
Augustenburger Platz 1
13353 Berlin
Germany
+4930 450566006
Mobile: 0160 93769872
peter.robinson@charite.demailto:peter.robinson@charite.de
http://compbio.charite.de
http://www.human-phenotype-ontology.org
I have learned from my mistakes, and I am sure I can repeat them exactly
ORCID ID:http://orcid.org/0000-0002-0736-9199http://orcid.org/0000-0002-0736-9199
Scopus Author ID 7403719646
Appointment request: http://doodle.com/pnrobinson

---

Von: Melissa Haendel [notifications@github.commailto:notifications@github.com]
Gesendet: Donnerstag, 29. Oktober 2015 01:56
An: monarch-initiative/monarch-disease-ontology
Betreff: Re: [monarch-disease-ontology] EFO diseases (#57)

yet another disease ontology!

On Oct 28, 2015, at 5:39 PM, Nicole Washington <notifications@github.commailto:notifications@github.commailto:notifications@github.com> wrote:

it seems EFO has disease identifiers, like eye diseaseshttp://www.ebi.ac.uk/efo/EFO_0003966. we need to be able to bridge these, so we can use the gwas data they've curated.

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/57.

Dr. Melissa Haendel

Associate Professor
Ontology Development Group, OHSU Library
www.ohsu.edu/library/ontologyhttp://www.ohsu.edu/library/ontologyhttp://www.ohsu.edu/library/ontology
Department of Medical Informatics and Clinical Epidemiology
Oregon Health & Science University
haendel@ohsu.edumailto:haendel@ohsu.edumailto:haendel@ohsu.edu
skype: melissa.haendel
503-407-5970

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/57#issuecomment-152043504.

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/57#issuecomment-152089432.

Dr. Melissa Haendel

Associate Professor
Ontology Development Group, OHSU Library
www.ohsu.edu/library/ontologyhttp://www.ohsu.edu/library/ontology
Department of Medical Informatics and Clinical Epidemiology
Oregon Health & Science University
haendel@ohsu.edumailto:haendel@ohsu.edu
skype: melissa.haendel
503-407-5970

[cmungall]

EFO now fully integrated into MONDO