add rdf generation back in

monarch-initiative · Jul 2, 2024 · 76d94f6 · 76d94f6
1 parent 5c738a7
commit 76d94f6
Showing 1 changed file with 7 additions and 8 deletions.
diff --git a/Jenkinsfile b/Jenkinsfile
@@ -45,19 +45,18 @@ pipeline {
             }
         }
         stage('transform') {
-            //TODO: add --rdf flag back to produce individual rdf files
             steps {
-                sh 'poetry run ingest transform --all --log --write-metadata'
+                sh 'poetry run ingest transform --all --log --rdf --write-metadata'
                 sh '''
                    sed -i.bak 's@\r@@g' output/transform_output/*.tsv
                    rm output/transform_output/*.bak
                 '''
-//                sh '''
-//                   gunzip output/rdf/*.gz
-//                   sed -i.bak 's@\\r@@g' output/rdf/*.nt
-//                   rm output/rdf/*.bak
-//                   gzip output/rdf/*.nt
-//                 '''
+               sh '''
+                  gunzip output/rdf/*.gz
+                  sed -i.bak 's@\\r@@g' output/rdf/*.nt
+                  rm output/rdf/*.bak
+                  gzip output/rdf/*.nt
+                '''
             }
         }
         stage('merge') {