Get output from modular ingests before merge in Jenkins job #593
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR adds a script to download the output of modular ingests from their releases
(listed in a dictionary with the format
"ingest-name": ["output_file_nodes", "output_file_edges"]
as applies to your ingest)'As well as a step in the
ingest-all
Jenkinsfile to run this script right before the merge step.A test run of this updated Jenkins job can be found here
(Note: this run failed because some modular ingests still have
original_object
as a column in their output, which causescat-merge
to fail)@kevinschaper we should probably get @amc-corey-cox @madanucd and @AO33 access to Jenkins at some point.
Important Notes:
ncbi-gene
andalliance-variant-allele-ingest
are currently commented out until we're sure they're ready to be included*/main
rather than this branch.