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Workflow file for this run
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| # Basic QC workflow | |
| name: CI | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| sssom_validation: | |
| runs-on: ubuntu-latest | |
| container: obolibrary/odkfull:v1.4 | |
| steps: | |
| - name: Install latest SSSOM | |
| env: | |
| DEFAULT_BRANCH: main | |
| run: pip install --upgrade pip && pip install -U sssom phenio-toolkit | |
| - uses: actions/checkout@v4 | |
| - name: Prepare mappings | |
| env: | |
| DEFAULT_BRANCH: main | |
| run: | | |
| make RUN="" GH_ACTION=true mappings | |
| - name: Run Mapping QC checks | |
| env: | |
| DEFAULT_BRANCH: main | |
| run: make test |