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Docker file / image for owlsim3 server #58

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tudorgroza opened this Issue Mar 1, 2017 · 2 comments

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tudorgroza commented Mar 1, 2017

Hi @jnguyenx - can you please hack a Dockerfile to build a configuration specific docker image? Can you also please point me to some documentation that shows how to build the associated data files (owl, tsvs, etc).
Thanks!

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jnguyenx added a commit to monarch-initiative/monarch-owlsim-data that referenced this issue Mar 8, 2017

jnguyenx added a commit that referenced this issue Mar 10, 2017

jnguyenx added a commit that referenced this issue Mar 10, 2017

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jnguyenx Mar 10, 2017

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I've set up some human only data for you. Currently our data pipeline is fragile and complicated but @cmungall is working on simplifying this process. If you can wait a bit it'll be easier to generate the files needed by owlsim.

So keep in mind that we'll temporary use this all-hp.owl until we have a better pipelin solution.

In the meantime, here's the command to build the docker image for human:

mvn package
docker build --build-arg species=human -t owlsim-human
docker run -p 8080:8080 owlsim-human
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jnguyenx commented Mar 10, 2017

I've set up some human only data for you. Currently our data pipeline is fragile and complicated but @cmungall is working on simplifying this process. If you can wait a bit it'll be easier to generate the files needed by owlsim.

So keep in mind that we'll temporary use this all-hp.owl until we have a better pipelin solution.

In the meantime, here's the command to build the docker image for human:

mvn package
docker build --build-arg species=human -t owlsim-human
docker run -p 8080:8080 owlsim-human

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jnguyenx Mar 10, 2017

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Here's the issue to monitor for the simplified data provider:
biolink/biolink-api#27

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jnguyenx commented Mar 10, 2017

Here's the issue to monitor for the simplified data provider:
biolink/biolink-api#27

jnguyenx added a commit that referenced this issue Apr 7, 2017

jnguyenx added a commit that referenced this issue Apr 7, 2017

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