Phenotype sort

[jmcmurry]

We'd like an algorithm that orders a list of phenotypes in a way that minimizes the sum of the sim distances between adjacent terms, with an option to co-sort two similar lists as well (retaining their membership in the original lists).

Note that ideally, any runner-up matches would be noted (and sorted) as such; see
https://github.com/monarch-initiative/monarch-app/issues/1525
which replaces
genome-one/monarch#35

[pnrobinson]

Hi Julie, there are many sorting algorithms, but why not just do something simple and sort the terms according to the same predefined scheme or organs. brain

…

-morphology

--sub part 1

-subpart 2

-physiology heart

-morphology

-physiology? etc. Then our users would get used to some default ordering.

-Peter Peter Robinson Professor and Donald A. Roux Chair, Genomics and Computational Biology The Jackson Laboratory for Genomic Medicine 10 Discovery Drive Farmington, CT 06032 860.837.2095 t | 860.990.3130 m peter.robinson@jax.org<mailto:peter.robinson@jax.org> www.jax.org Robinson lab: https://robinsongroup.github.io/ New Book: Computational Exome and Genome Analysis<https://www.crcpress.com/Computational-Exome-and-Genome-Analysis/Robinson-Piro-Jager/p/book/9781498775984> The Jackson Laboratory: Leading the search for tomorrow's cures

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