GP_EvoSimulation

Evolution models simulator

Example

# Jukes-Cantor model simulation from NCBI sequence ID
./evo_sim.py U00096.3 jukes-cantor --time=1.0 --steps=100 --alpha=0.25 -o sim_JC.png

# Jukes-Cantor model simulation from file
./evo_sim.py demo/U00096.3.fasta jukes-cantor --time=1.0 --steps=100 --alpha=0.25 -o sim_JC.png

# same for Kimura model
./evo_sim.py demo/U00096.3.fasta kimura --time=1.0 --steps=100 --alpha=1.0 --beta=0.25 -o sim_K.png

Jukes-Cantor model simulation

Kimura model simulation

Jukes-Cantor models with different parameters