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Python3.8fix multiprocessing work around #147

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Python3.8fix multiprocessing work around #147

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d9d0382
python req < 3.9
MLKaufman Jan 18, 2024
61cdfa4
add start method 'fork' to maintain legacy multiprocessing
MLKaufman Jan 18, 2024
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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -46,7 +46,7 @@
"License :: OSI Approved :: MIT License",
"Topic :: Scientific/Engineering :: Bio-Informatics"
],
python_requires=">=3.6,<3.8",
python_requires=">=3.6,<3.9",
install_requires=[
"pandas",
"pyranges",
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6 changes: 6 additions & 0 deletions src/talon/talon.py
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Expand Up @@ -32,6 +32,12 @@
from . import query_utils as qutils
from . import transcript_utils as tutils

# fix to maintain multiprocessing similar to python 3.7
# see https://github.com/deeptools/HiCExplorer/issues/628
# and https://chrissardegna.com/blog/multiprocessing-changes-python-3-8/
if not mp.get_start_method(allow_none=True):
mp.set_start_method('fork')

# set verbosity for pysam
save = pysam.set_verbosity(0)
# pysam.set_verbosity(save)
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