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Speed improvement to dist.seqs #653

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mothur-westcott opened this issue Sep 3, 2019 · 1 comment
Closed

Speed improvement to dist.seqs #653

mothur-westcott opened this issue Sep 3, 2019 · 1 comment
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Command:Dist.seqs Enhancement
Milestone
Version 1.43.0

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@mothur-westcott
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  • Pass cutoff to distance calculators
  • Use cutoff to bail "early" on reads whose distance is above cutoff
@mothur-westcott mothur-westcott added this to the Version 1.43.0 milestone Sep 3, 2019
@mothur-westcott mothur-westcott mentioned this issue Sep 3, 2019
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mothur-westcott added a commit that referenced this issue Sep 4, 2019
@mothur-westcott
Improves speed for onegap dist calcs
16ba835 
#653
mothur-westcott added a commit that referenced this issue Sep 4, 2019
@mothur-westcott
Improves speed for distance calcs with countends=f
465b3d7 
#653
mothur-westcott added a commit that referenced this issue Sep 4, 2019
@mothur-westcott
Improves speed on onegap, countends=f
61a9ac4 
#653
mothur-westcott added a commit that referenced this issue Sep 4, 2019
@mothur-westcott
Improves speed for each gap countends=f
dd2d764 
#653
mothur-westcott added a commit that referenced this issue Sep 4, 2019
@mothur-westcott
Adds speed improvements to pairwise.seqs dist calls
b91091e 
#653
@mothur-westcott
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Also applies changes to distance calcs in pairwise.seqs

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Command:Dist.seqs Enhancement
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Version 1.43.0
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@mothur-westcott