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Feat/metapopulation model #259

Merged
merged 23 commits into from
Jul 4, 2024
Merged

Feat/metapopulation model #259

merged 23 commits into from
Jul 4, 2024

Commits on Jul 18, 2023

  1. Documentation updates

    @giovannic
    giovannic committed Jul 18, 2023
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  2. mixing matrix row sums == 1 error -> warning

    @htopazian @giovannic
    htopazian authored and giovannic committed Jul 18, 2023
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  3. Reduce mixed transmission with testing 

     * Add rdt testing parameters
 * Update biting_process to consider rdt testing for mixing
    @giovannic
    giovannic committed Jul 18, 2023
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  4. rebase rdt_mixing to time_varying_metapop 

    - updating metapop vignette
- clarifying row & col meanings
    @htopazian @giovannic
    htopazian authored and giovannic committed Jul 18, 2023
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  5. Reduce mixed transmission with testing 

     * Add rdt testing parameters
 * Update biting_process to consider rdt testing for mixing
    @giovannic
    giovannic committed Jul 18, 2023
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  6. Remove platform specific build files

    @giovannic
    giovannic committed Jul 18, 2023
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  7. Add new formula for border test and treat: 

     * refactor transmission mixing code
 * fix regressions
 * add time caching
    @giovannic
    giovannic committed Jul 18, 2023
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  8. Update documentation for border check model

    @giovannic
    giovannic committed Jul 18, 2023
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  9. fixing metapopulation vignette error

    @htopazian @giovannic
    htopazian authored and giovannic committed Jul 18, 2023
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  10. Change test and treat coefficients

    @giovannic
    giovannic committed Jul 18, 2023
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  11. Update RDT detection model

    @giovannic
    giovannic committed Jul 18, 2023
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  12. Fix regression tests

    @giovannic
    giovannic committed Jul 18, 2023
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  13. RDT+

    @giovannic
    giovannic committed Jul 18, 2023
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  14. Add test case for completely removing transmission

    @giovannic
    giovannic committed Jul 18, 2023
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Commits on Sep 6, 2023

  1. Add asymmetric transmission in mixing: 

     * Added export_mixing and import_mixing arguments to run_metapop_...
 * Update create_transmission_mixer to mix eir on import and foim on
   export
 * Fix regression tests
    @giovannic
    giovannic committed Sep 6, 2023
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Commits on Apr 9, 2024

  1. Merge pull request #277 from mrc-ide/feat/metapop_asym 

    Add asymmetric transmission in mixing:
    @htopazian
    htopazian committed Apr 9, 2024
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Commits on Jun 6, 2024

  1. Merge branch 'dev' into feat/metapopulation_model

    @htopazian
    htopazian committed Jun 6, 2024
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  2. update documentation

    @htopazian
    htopazian committed Jun 6, 2024
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  3. fix metapop vignette 

    change mixing to export_mixing and import_mixing
    @htopazian
    htopazian committed Jun 6, 2024
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Commits on Jul 1, 2024

  1. Update R/mixing.R 

    Co-authored-by: Paul Liétar <pl2113@ic.ac.uk>
    @htopazian @plietar
    htopazian and plietar committed Jul 1, 2024
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  2. Update R/mixing.R 

    Co-authored-by: Paul Liétar <pl2113@ic.ac.uk>
    @htopazian @plietar
    htopazian and plietar committed Jul 1, 2024
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Commits on Jul 3, 2024

  1. Remove unnecessary gitignore i386

    @giovannic
    giovannic committed Jul 3, 2024
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Commits on Jul 4, 2024

  1. Merge branch 'dev' into feat/metapopulation_model

    @giovannic
    giovannic committed Jul 4, 2024
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