Mummer alignment tool
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Aleksey Zimin
Aleksey Zimin removed all openmp stuff
Latest commit 277dac5 Jan 23, 2018
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configs Start SWIG bindings. Jul 23, 2015
docs Initial version 3.23 Nov 8, 2012
examples Typo in Readme. Aug 11, 2017
include removed all openmp stuff Jan 23, 2018
m4 Begin implement -G for large sequence alignment, fine grain parallelism. Apr 18, 2016
scripts Fix for #32 Aug 11, 2017
src removed all openmp stuff Jan 23, 2018
swig Set number of OpenMP threads in scripts bindings. Aug 12, 2016
tests More compliant SAM output. Oct 12, 2017
unittests Moved to artistic license 2.0 Aug 2, 2017
.gitignore Switches to nucmer to save/load suffix array (added test). Bug fixing. Sep 11, 2015
.gitmod Use develop branch in MaSuRCA. Nov 12, 2015
.travis.yml Use check Jun 9, 2017
ACKNOWLEDGEMENTS Initial version 3.23 Nov 8, 2012
COPYRIGHT Initial version 3.23 Nov 8, 2012
ChangeLog Initial version 3.23 Nov 8, 2012
INSTALL.md Update INSTALL.md Sep 16, 2017
LICENSE.md Moved to artistic license 2.0 Aug 2, 2017
MANUAL.md Update MANUAL.md Sep 16, 2017
Makefile.am Examples. mummer.pc and installation of library headers. Aug 11, 2017
Makefile.orig Generation of prototypes with cproto. Compilation with tup. No more w… Nov 8, 2012
OBSOLETE.md Made nucmer2xfig, run-mummer1, run-mummer3 and mapview obsolete. Oct 22, 2015
README.md Travis badges Jun 9, 2017
configure.ac Bumped version to 4.0.0beta2 Oct 14, 2017
mummer.pc.in Added missing mummer.pc.in. Aug 23, 2017
yaggo.mk Fixed distcheck of swig. Oct 15, 2015

README.md

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mummer

MUMmer is a versatil alignment tool for DNA and protein sequences. To install the software, download the latest release and follow the installation instructions. For instruction on how to use the software, consult the manual.