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Welcome to the vintools wiki!

Getting started

• Set up a Google VM
• Add shortcut access to Jupyter Notebooks
• Preparing an R kernel for Jupyter Notebook
• How to organize a software project

Other useful know-hows

• How to permanently authenticate a GitHub repository

Workflows

• Scorch

  • Description: Adjustable Scanpy preprocessing recipe + pytorch-Harmony implementation
  • Built on: Scanpy | pytorch-Harmony

• PoolQ

  • Description (from the website): PoolQ is a tool designed to quantify the results of pooled screens based on DNA sequencing data
  • Built on: GPP Web Portal PoolQ

• DESeq2

• deepTools

• csv2md

• cDNA Detector

Presentations and science writing

• Lab Meeting Presentations
• Keynote template