Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
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README.md
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README.md

ideel

Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes

Dependencies:

  • Snakemake
  • Prodigal
  • Diamond
  • R

You will need a diamond index of UniProt TREMBL

run

Clone the repo. Make a directory called "genomes", put assemblies in there with .fa file extension, then:

snakemake