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Tedna 1.3.0

This is the Tedna repository.

It has first been published in Bioinformatics in 2014.

It also has been used in Molecular Ecology in 2018.

To use Tedna, clone it and type make.

Type ./tedna -h to get some info on the options.

If you have paired-end reads with insert size 300, you can type:

./tedna -1 left.fastq -2 right.fastq -k 61 -i 300 -o output.fasta

If you have long reads (such as PacBio), you can type:

./tedna -1 reads.fastq -k 61 -m 1000 -t 25 -o output.fasta

Previous versions are available from the URGI Website.

Do no hesitate to contact me for any further question.

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Transposable element assembler

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