Merge branch 'cherry-pick-e461e011' into 'release-v0.7'

Merge branch 'slee/release-v0.7.2' into 'release-v0.7'

See merge request machine-learning/dorado!1079

CHANGELOG.md

@@ -2,6 +2,16 @@
 
 All notable changes to Dorado will be documented in this file.
 
+# [0.7.2] (18 June 2024)
+
+This release of Dorado resolves basecalling failures when running v5 SUP models on CPU-only devices or v5 RNA HAC on Apple silicon. It also fixes bugs in `dorado demux` and `dorado correct`, and corrects `sm` and `sd` tags to match the Dorado SAM specification.
+
+* 383527291e0553fa08d647af81a6c8a4bf4045a5 - Fix bug causing v5 SUP models to fail when running on CPU-only devices
+* c36f4443d982a2ca47dc84fb8b840929811ea087 - Fix bug causing RNA v5 HAC basecalling to fail on Apple silicon
+* 36218004593b0ebba37ff870eb3d92c8238fb0c6 - Fix bug causing segfault in `dorado demux`
+* 3b51c1b3c694453d7da04ea91030d7e98b4e9681 - Fix sub-par alignments in `dorado correct`
+* d0df79c49f29d2f7cdff3423071380be3b6c6918 - Correct shift and scale (`sm` and `sd`) SAM tags to match SAM specification
+
 # [0.7.1] (3 June 2024)
 
 This release of Dorado fixes out of memory errors when using the v5 SUP model with methylation calling, resolves several bugs in `dorado correct` and adds correct handling of the `BC:Z` tag when running `demux` multiple times.

README.md

@@ -22,10 +22,10 @@ If you encounter any problems building or running Dorado, please [report an issu
 
 First, download the relevant installer for your platform:
 
- - [dorado-0.7.1-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-x64.tar.gz)
- - [dorado-0.7.1-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-arm64.tar.gz)
- - [dorado-0.7.1-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-osx-arm64.zip)
- - [dorado-0.7.1-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-win64.zip)
+ - [dorado-0.7.2-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-linux-x64.tar.gz)
+ - [dorado-0.7.2-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-linux-arm64.tar.gz)
+ - [dorado-0.7.2-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-osx-arm64.zip)
+ - [dorado-0.7.2-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-win64.zip)
 
 Once the relevant `.tar.gz` or `.zip` archive is downloaded, extract the archive to your desired location.
 

cmake/DoradoVersion.cmake

@@ -1,6 +1,6 @@
 set(DORADO_VERSION_MAJOR 0)
 set(DORADO_VERSION_MINOR 7)
-set(DORADO_VERSION_REV 1)
+set(DORADO_VERSION_REV 2)
 
 find_package(Git QUIET)
 if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git")