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Merge branch 'jdaw/remove-modbase-tags-secondary' into 'master'
remove MM/ML/MN tags when not soft clipping Closes DOR-494 See merge request machine-learning/dorado!777
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@HD VN:1.6 SO:unknown | ||
@PG ID:basecaller PN:dorado VN:0.2.3+0f041c4+dirty CL:dorado basecaller dna_r9.4.1_e8_hac@v3.3 ./tests/data/pod5 -x cpu --modified-bases 5mCG | ||
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@PG ID:basecaller PN:dorado VN:0.5.0+5fa4de73+dirty CL:dorado basecaller dna_r9.4.1_e8_hac@v3.3 ./tests/data/pod5 -x cpu --modified-bases 5mCG --emit-sam | ||
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>read1 999 | ||
CCCTTTTTGCCCCTTTACGCCGCACCTAGCATATGCGCCTGCCACTTGCAGCTTTCCCGCCCCTGCCCGCCTGCCCACCCCTTGCCGCCTCCTTATGCGCCGCCCCGCCCACCCCCGCCCACCCACCGCCCCACGCTTCCCCCACCCGCCGCCCACGCGCATCGCCCGCCCCCCCCGCCCCACCCGCCCACCGCCCTGTCCAAAGCCCGCCCCACGCCCGGCCCGCGCCCGCCAGCCCCGCCCCGTGGCCGCCGCCCCCGCCCGCCCCCCACCCGCCCCCCTACCTGCCCGCCTGGCCGCCGCCTCCCATCCCACCCGCCACCCGCCCCCTGTGCCCCACTTCCAGCCCGGCCGCCCATCCCCGCCCCCCCCCCCCACCCACCGCCCCCCGGCCAGCCCCCGCCCCCGCCCCGCCCGCCCGGCGCCGGCCCCATGCCCCCACCCCGCTGCCCCGCGCCCCCGCCCAGCCACACCCACCCCGCCGCCCCACCCGCCCCCACCGGCCCCGCCCGGCGCAGCCCGGCAGCTTCCCCCGCCCACGCCGCCCCCTTGCCAGCCCACCCCGCAGCTCACCCACCAGCCCATCCCGCTCCCCCGGCGCCCCAGCCGCCCGCCCACCCGCCGCGCACCCGCCCCCGCCCGCTCCCCCCCGCCCACCCGCCCGCCTCGCCCATCTGCTCCCCCCACCCACCCCCGCGCCCATGCGCCCCCCGCCCACCCCGCGCCCACCCGCCCCCCGCCCCACCCACCCACCCCGCCCCGCCCCACTTGCCCCCACGCCCCCGCCCCCCGCCGCCGCCCTCCCACACACGCTTCCCAGCCCGCTTCGCACAGCGCCTACCGCCGCCCCACCCGCCCCTTAAAAGCCACCGGCGCCCGCGCACCCACCCCGCCATCCAGCAGCCAACCAGCCCTTGCTTCCCCATACTTGTAAAGCTTCCCCGCACCCGCCCGCCTTCCACCCACCCACCGCCCCCCCGGCCCGCCGCCCGGCCTCGC | ||
>read3 999 | ||
CCCTTTTTGCCCCTTTACGCCGCACCTAGCATATGCGCCTGCCACTTGCAGCTTTCCCGCCCCTGCCCGCCTGCCCACCCCTTGCCGCCTCCTTATGCGCCGCCCCGCCCACCCCCGCCCACCCACCGCCCCACGCTTCCCCCACCCGCCGCCCACGCGCATCGCCCGCCCCCCCCGCCCCACCCGCCCACCGCCCTGTCCAAAGCCCGCCCCACGCCCGGCCCGCGCCCGCCAGCCCCGCCCCGTGGCCGCCGCCCCCGCCCGCCCCCCACCCGCCCCCCTACCTGCCCGCCTGGCCGCCGCCTCCCATCCCACCCGCCACCCGCCCCCTGTGCCCCACTTCCAGCCCGGCCGCCCATCCCCGCCCCCCCCCCCCACCCACCGCCCCCCGGCCAGCCCCCGCCCCCGCCCCGCCCGCCCGGCGCCGGCCCCATGCCCCCACCCCGCTGCCCCGCGCCCCCGCCCAGCCACACCCACCCCGCCGCCCCACCCGCCCCCACCGGCCCCGCCCGGCGCAGCCCGGCAGCTTCCCCCGCCCACGCCGCCCCCTTGCCAGCCCACCCCGCAGCTCACCCACCAGCCCATCCCGCTCCCCCGGCGCCCCAGCCGCCCGCCCACCCGCCGCGCACCCGCCCCCGCCCGCTCCCCCCCGCCCACCCGCCCGCCTCGCCCATCTGCTCCCCCCACCCACCCCCGCGCCCATGCGCCCCCCGCCCACCCCGCGCCCACCCGCCCCCCGCCCCACCCACCCACCCCGCCCCGCCCCACTTGCCCCCACGCCCCCGCCCCCCGCCGCCGCCCTCCCACACACGCTTCCCAGCCCGCTTCGCACAGCGCCTACCGCCGCCCCACCCGCCCCTTAAAAGCCACCGGCGCCCGCGCACCCACCCCGCCATCCAGCAGCCAACCAGCCCTTGCTTCCCCATACTTGTAAAGCTTCCCCGCACCCGCCCGCCTTCCACCCACCCACCGCCCCCCCGGCCCGCCGCCCGGCCTCGC | ||
>read2 899 | ||
CCGGCCCCGGCCCAGCCTTGCCCGCCTTCTCGAAGCGCCGCCGCGCCTCCAGCCCAGCCCGCCCACCCTCGCCCGCTTGCCCCCGGCTCGCGCTCCAGGCGCCCGGCCCCGGCCCCGCCCGCGCTCTGCCATTTCCACTTCCCACCGGCCAAAGCCCGCCGGCATCCCGCGCGCCCGCACAAGCCAAGCTTCCCCGGCTTGGCGCCATTTAAGCAAAAGCCGCCCGCCAACGCCAGCGCCCGGCGCCCGGCCCGCCACCGGCAGCGCCGCCCTTTCCAGCCCGGCGCTGGCCATCGGCCAGCGCACCACGAAGCCAGCCCACCGCCAGCCCGCCAAAGCCGCTCCCACAAGCCAAAGCCCGCCCACCCCCAGCCACCCATACCCCGCTCGCCCGCCAGCTTCTGTATGCCCACCCAGCGCACTTGCTTTCCACCCCCACCCCCGCCCCGCGCCCGCCCGCCCGCCACCCCTGCCCCGCCCCCCGCCGCTGCCTTACCGCTGCCCCAAAGCGCCCTTCCAGCACTTCCTTAGCCACCCTTTTTAGCTTCACTTCCACCTACCGCTTGCCGCCGGCTGCTTCCCCGCCCATCCCACCGCACCCGCCCGCGCCTTATGCGCACCGCCCGCGCCCGGCCTGCAAGCCAGCTTCGCGCGCCCGCTTCCACCACCCCCGCCAGCCCGCTTCCTGCTTGCCCCCGCCGCACCGCCCACCCACCCCCACCGGCCAGCGCTCATATGCCCCCGCCGCACCAGCACGCCACCGCCCGCCTCCTTCGCCAGCCCGCCCACCCGCCGCCCAGCCACCGCACCCACTCAAGGGGTCGCCTCTCATGCGCATCATGCGCAAAAAAAAAAACGGGGGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |