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[DOR-670] Remove references to hdf5 and libaec
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Also the zstd reference is no longer valid since we link statically.
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blawrence-ont committed Apr 22, 2024
1 parent 12509cf commit c3ece9a
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2 changes: 1 addition & 1 deletion DEV.md
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Expand Up @@ -35,5 +35,5 @@ $ brew link autoconf@2.69

The following other packages need to be available as well
```bash
brew install openssl zstd hdf5
brew install openssl zstd
```
2 changes: 0 additions & 2 deletions README.md
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Expand Up @@ -452,8 +452,6 @@ On macOS, the equivalent export would be (change path as appropriate):
$ export DYLD_LIBRARY_PATH=<PATH_TO_DORADO>/dorado-x.y.z-osx-arm64/lib:$DYLD_LIBRARY_PATH
```

This will let the Dorado binary pick up the shipped libraries and you will not need to manually install `libaec` and `zstd`.

### Improving the Speed of Duplex Basecalling

Duplex basecalling is an IO-intensive process and can perform poorly if using networked storage or HDD. This can generally be improved by splitting up POD5 files appropriately.
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