Add plotly vignette to index

natverse · Oct 5, 2019 · d0c744e · d0c744e
1 parent c616745
commit d0c744e
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -59,6 +59,7 @@ articles:
   - '`neurons-intro`'
   - '`neurons-as-graph`'
   - '`NeuroGeometry`'
+  - '`plotly`'
 reference:
   - title: Package Help
     desc: Provides an overview of key functions and classes

diff --git a/vignettes/neurons-as-graph.Rmd b/vignettes/neurons-as-graph.Rmd
@@ -117,8 +117,8 @@ plot(sg)
 
 It can be useful to plot the graph with a tree layout:
 
-```{r, fig.width=5, fig.height=5}
-plot(sg, layout=igraph::layout_as_tree, edge.arrow.size=.3, vertex.size=12)
+```{r, fig.width=6, fig.height=6}
+plot(sg, layout=igraph::layout_as_tree, edge.arrow.size=.3, vertex.size=20)
 ```
 
 Note that the root of the neuron is placed at the top of the plot (point number
@@ -158,7 +158,7 @@ igraph::V(sg)$vid[ups]
 Here we plot those _terminal_ branchpoints in red while internal branches are
 displayed in blue.
 
-```{r}
+```{r, fig.height=4, fig.width=5}
 plot(n, WithNodes = F)
 terminal_branches=igraph::V(sg)$vid[ups]
 other_branches=setdiff(branchpoints(n), terminal_branches)