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Prune #403

Merged
merged 35 commits into from Jan 31, 2020
Merged

Prune #403

merged 35 commits into from Jan 31, 2020

Commits on Jul 19, 2019

  1. Document new prune functions

    @alexanderbates
    alexanderbates committed Jul 19, 2019
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  2. Add prune in volume and online

    @alexanderbates
    alexanderbates committed Jul 19, 2019
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  3. Update ngraph.R

    @alexanderbates
    alexanderbates committed Jul 19, 2019
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  4. Update documentation for prune_in_volume

    @alexanderbates
    alexanderbates committed Jul 19, 2019
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  5. Update docs for prune_in_volume

    @alexanderbates
    alexanderbates committed Jul 19, 2019
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  6. Added correct_soma 

    * Interactively re-reoot a neuron, or neurons in a neuronlist, by choosing a more appropriate leaf node
    @alexanderbates
    alexanderbates committed Jul 19, 2019
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  7. Added make_model 

    * Generate a 3D model from connector and/or tree node data
    @alexanderbates
    alexanderbates committed Jul 19, 2019
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  8. Interactively select points in 3D

    @alexanderbates
    alexanderbates committed Jul 19, 2019
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Commits on Jul 22, 2019

  1. Merge branch 'master' into prune 

    * master:
  dev: travis build status should be for master branch
  redown
  Bump version/NEWS
  dev: ignore spare directory
  Spelling
    @jefferis
    jefferis committed Jul 22, 2019
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  2. spelling / roxygenize

    @jefferis
    jefferis committed Jul 22, 2019
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Commits on Jul 23, 2019

  1. Rename brain param to surf 

    * since it will often already be a surface
* also check that input is an hxsurf if neuropil argument is non-null
    @jefferis
    jefferis committed Jul 23, 2019
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  2. pointsinside returns logical not distance

    @jefferis
    jefferis committed Jul 23, 2019
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  3. Doc fixes for prune_volume 

    * also remove references in example to interactive pruning (this isn't)
    @jefferis
    jefferis committed Jul 23, 2019
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Commits on Jul 31, 2019

  1. update pkgdown config 

    * new groupings for 3d/interactive functions
* still need to regenerate
    @jefferis
    jefferis committed Jul 31, 2019
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  2. roxygenise

    @jefferis
    jefferis committed Jul 31, 2019
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Commits on Aug 1, 2019

  1. remove greek alpha for travis 

    * causes latex error on travis, so not worth it
    @jefferis
    jefferis committed Aug 1, 2019
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Commits on Aug 5, 2019

  1. minor doc fixes

    @jefferis
    jefferis committed Aug 5, 2019
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  2. fix typo in prompt

    @jefferis
    jefferis committed Aug 5, 2019
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  3. Details for prune_online

    @jefferis
    jefferis committed Aug 5, 2019
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  4. Fix up correct_soma

    @jefferis
    jefferis committed Aug 5, 2019
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  5. rename correct_soma -> correct_root

    @jefferis
    jefferis committed Aug 5, 2019
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  6. use pop3d rather than clear in select_points 

    * this means you can set up the scene at the start rather than continually replotting it
    @jefferis
    jefferis committed Aug 5, 2019
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  7. Give select_points option to clear plot on exit 

    * we need this now since we don't blast the plot repeatedly with clear3d
    @jefferis
    jefferis committed Aug 5, 2019
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  8. Fix prune_online to cope with new select_points behaviour 

    * i.e. the fact that select_points no longer clears
* also make prune_online use pop rather than clear
    @jefferis
    jefferis committed Aug 5, 2019
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  9. WIP fixing make_model 

    * @alexanderbates back to you to fix
    @jefferis
    jefferis committed Aug 5, 2019
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  10. removed function to asign axon-dendrite split

    @alexanderbates
    alexanderbates committed Aug 5, 2019
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Commits on Aug 6, 2019

  1. Document make_model

    @alexanderbates
    alexanderbates committed Aug 6, 2019
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  2. Update NAMESPACE

    @alexanderbates
    alexanderbates committed Aug 6, 2019
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  3. fix make_model

    @alexanderbates
    alexanderbates committed Aug 6, 2019
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  4. Update interactive.R

    @alexanderbates
    alexanderbates committed Aug 6, 2019
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  5. Fixed spelling errors in interactive.R

    @alexanderbates
    alexanderbates committed Aug 6, 2019
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  6. Update NAMESPACE

    @alexanderbates
    alexanderbates committed Aug 6, 2019
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  7. don't export methods for prune_online

    @alexanderbates
    alexanderbates committed Aug 6, 2019
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  8. put prune_online mthods back

    @alexanderbates
    alexanderbates committed Aug 6, 2019
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Commits on Jan 31, 2020

  1. Merge branch 'master' into prune

    @jefferis
    jefferis committed Jan 31, 2020
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