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Improved support for neurons as meshes (WIP) #442

Merged
merged 13 commits into from Aug 25, 2020
Merged

Improved support for neurons as meshes (WIP) #442

merged 13 commits into from Aug 25, 2020

Commits on Aug 9, 2020

  1. update roxygen

    @jefferis
    jefferis committed Aug 9, 2020
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  2. Add support for reading meshes

    @jefferis
    jefferis committed Aug 9, 2020
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Commits on Aug 10, 2020

  1. Support for writing neuron meshes

    @jefferis
    jefferis committed Aug 10, 2020
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  2. Add test for writing neuron meshes

    @jefferis
    jefferis committed Aug 10, 2020
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Commits on Aug 13, 2020

  1. Support for writing neuronlists in mesh format 

    * with tests
    @jefferis
    jefferis committed Aug 13, 2020
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Commits on Aug 14, 2020

  1. minor fix - skip when testing from rstudio without internet

    @jefferis
    jefferis committed Aug 14, 2020
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  2. Doc polishing in roxygen error

    @jefferis
    jefferis committed Aug 14, 2020
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  3. Make add=T default for plot3d.neuronlist 

    * this is what we need when plotting meshes and is implicit in all the 
  other plot methods
    @jefferis
    jefferis committed Aug 14, 2020
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  4. Make skipRedraw the default 

    * I don’t think it adds much and will be v slow for meshes
    @jefferis
    jefferis committed Aug 14, 2020
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  5. Doc fixes

    @jefferis
    jefferis committed Aug 14, 2020
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Commits on Aug 18, 2020

  1. Add summary.mesh3d (including surface area calc) 

    * use this in tests
    @jefferis
    jefferis committed Aug 18, 2020
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  2. Merge remote-tracking branch 'refs/remotes/origin/master' 

    * fixes needed due to one overlapping change in code and several doc
  overlaps

Conflicts:
	R/neuronlist.R
	man/plot3d.boundingbox.Rd
	man/plot3d.cmtkreg.Rd
	man/plot3d.dotprops.Rd
	man/plot3d.neuron.Rd
	man/plot3d.neuronlist.Rd
    @jefferis
    jefferis committed Aug 18, 2020
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  3. Test for error when trying to write skeletons to mesh formats 

    * of course this might be possible using polylines or some strategy that "filled out" skeletons
  based on radius info if that were actually reliable
    @jefferis
    jefferis committed Aug 18, 2020
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