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3.1.1 build failure on macOS and Linux #937
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Here's related build update for Homebrew: |
How are you building the toolkit? If you are using something like Homebrew, we have no means to debug it. |
@durbrow Building from source without Homebrew. Can confirm that this issue is reproducible on both Apple Silicon and Intel Macs. I'm having trouble figuring out where this error is occuring during the build:
Here's a reprex using Docker, running Debian instead of macOS: docker run -it public.ecr.aws/acidgenomics/koopa
koopa system switch-to-develop
koopa update koopa
koopa configure system base
koopa install ncbi-sra-tools |
Seeing a similar issue on Debian for 3.1.1, whereas 3.1.0 builds successfully:
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What are your build commands? In house, we use our At home, I use pure I just now tried on an M1 Mac-mini:
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@durbrow , thanks the CMake example above was a helpful reference. Building ncbi-vdb and sra-tools side-by-side in the same directory seems to have resolved my issue. My current build script is here for reference: |
Hi sra-tools team,
I'm hitting a build failure for 3.1.1 on macOS:
I can confirm that 3.1.0 builds as expected, this seems to be specific to the 3.1.1 update.
My build script is here, for reference:
https://github.com/acidgenomics/koopa/tree/develop/lang/bash/include/install/common/shared/ncbi-sra-tools.sh
Best,
Mike
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