Vignettes

For more information on running RERConverge, please see the full R documentation or use the step-by-step instructions in the Full Walkthrough vignette.

Additional Documentation Notes:

• If the above link to the Full Walkthrough vignette does not work, please raise an issue to notify the developers.
• A vignette describing the process to perform "permulations" to estimate empirical P-values for genes and pathways is in the Permulation Walkthrough vignette.
• A description of wrapper functions to estimate gene trees from alignments using functions in the phangorn package is in the vignettes folder as PhangornTreeBuildingWalkthrough.