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@ndaniel
ndaniel committed Jun 2, 2022
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5 changes: 5 additions & 0 deletions NEWS
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Version Release History for FusionCatcher
=========================================

Version 1.35 -- 30 June 2022
----------------------------
* add support for Ensembl version 106
* fixed minor bugs

Version 1.33 -- January 22, 2021
---------------------------------
* increased sensitivity for TLX1, TLX2, and TLX3 fusions
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2 changes: 1 addition & 1 deletion bin/add_ambiguous_counts.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/add_custom_gene.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/add_gap_gene.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/analyze_exon-exon_mappings.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/analyze_splits_sam.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/analyze_star_chimeric.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/biopython_version.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/blat-filter-fusion.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/blat_parallel.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/bootstrap.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/build_ig.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/build_report_fusions_map.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/build_report_fusions_psl.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/build_report_fusions_psl2.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/build_summary.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/clean_bed.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/clip_quality.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/compress-reads-ids.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/concatenate.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/configuration.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/convert_pairs_symbols.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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4 changes: 2 additions & 2 deletions bin/droppe.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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Author: Daniel Nicorici
Email: Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
"""

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2 changes: 1 addition & 1 deletion bin/enlarge_genes.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/extract_fusion_genes.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/extract_reads_ids.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/extract_short_reads.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/extract_transcripts.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/fasta2reads.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/fastq2fasta.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/fastq_b2n.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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2 changes: 1 addition & 1 deletion bin/fc2vcf.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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4 changes: 2 additions & 2 deletions bin/filter-wiggle.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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Author: Daniel Nicorici
Email: Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
"""

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4 changes: 2 additions & 2 deletions bin/filter_fusion_sequences.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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Author: Daniel Nicorici
Email: Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
"""

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4 changes: 2 additions & 2 deletions bin/filter_map_pre-splitting.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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Author: Daniel Nicorici
Email: Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
"""

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4 changes: 2 additions & 2 deletions bin/filter_pairs.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
Expand Down Expand Up @@ -96,7 +96,7 @@ def format_epilog(self, formatter):
Author: Daniel Nicorici
Email: Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
"""

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4 changes: 2 additions & 2 deletions bin/filter_splits.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
Expand Down Expand Up @@ -75,7 +75,7 @@ def format_epilog(self, formatter):
Author: Daniel Nicorici
Email: Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
"""

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2 changes: 1 addition & 1 deletion bin/find_fusion_genes_map.py
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Author: Daniel Nicorici, Daniel.Nicorici@gmail.com
Copyright (c) 2009-2021 Daniel Nicorici
Copyright (c) 2009-2022 Daniel Nicorici
This file is part of FusionCatcher.
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