You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi!
I've tried several ways to download the genome of rattus_norvegicus, but it seems to always fail with a:
Downloading the genome of organism 'rattus_norvegicus' from Ensembl!
230 Login successful.
ERROR: Cannot find the genome and mitochondria files!
['Rattus_norvegicus.mRatBN7.2.dna.toplevel.fa.gz']
I think it might be something about the Ensembl release, because with "homo_sapiens" it works perfectly.
Also I tried it "the dirty way", downloading the data with a wget, decompressing everything and renaming it as I saw that you do in the script for getting the data. But seems to not work.
Any kind of help would be appreciated :)
Thanks in advance!
The text was updated successfully, but these errors were encountered:
Thanks! Is there any date on that release? Is there any patch? I work for the User Support Team of a Supercomputing Research center and we have users interested in that genome.
Hi!
I've tried several ways to download the genome of rattus_norvegicus, but it seems to always fail with a:
Which I find weird because that file exists in the Ensembl FTP server: http://ftp.ensembl.org/pub/release-105/fasta/rattus_norvegicus/dna/
I've executed this command:
fusioncatcher-build -g rattus_norvegicus -o /<my-path>
Also tried it specifying python2.7, and/or the ensembl path:
python2.7 bin/fusioncatcher-build.py -g rattus_norvegicus -o /<path> --ftp-ensembl-path=/pub/release-105/
I think it might be something about the Ensembl release, because with "homo_sapiens" it works perfectly.
Also I tried it "the dirty way", downloading the data with a wget, decompressing everything and renaming it as I saw that you do in the script for getting the data. But seems to not work.
Any kind of help would be appreciated :)
Thanks in advance!
The text was updated successfully, but these errors were encountered: