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Using Nanophore reads for Mitochondrial Genome assembly #215
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Only for Illumina data, do you want to combine short and long or only long? |
Hi,
Thank you for your respond. We want combine both short and long. Is there
any assembler you can you suggest?
…On Fri, 24 Nov 2023 at 9:31 AM, Nicolas Dierckxsens < ***@***.***> wrote:
Only for Illumina data, do you want to combine short and long or only long?
Will soon have a targeted long read assembler available:
https://github.com/ndierckx/NOVOLoci
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Don't think there are many, can't think of any at the moment, ask google :) I will include long reads to NOVOPlasty in the future, but don't have the time the next few months to finish it. But doesn't the assembly work with only short reads, or is it a plant mitochondrial genome? |
Alright. Thank you for your help. Really appreciate it.
…On Fri, 24 Nov 2023 at 10:19 PM, Nicolas Dierckxsens < ***@***.***> wrote:
Don't think there are many, can't think of any at the moment, ask google :)
I will include long reads to NOVOPlasty in the future, but don't have the
time the next few months to finish it.
I have an unpublished version that is not ready to make public, I just
helped someone for one assembly:
https://www.mdpi.com/1422-0067/24/4/3976
But doesn't the assembly work with only short reads, or is it a plant
mitochondrial genome?
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Hi, can we use Nanophore reads for the Mitochondrial genome assembly using Novoplasty? Or it still only for Illumina data?
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