fix: prevent pruning children of root for real

neherlab · Jul 9, 2023 · ee59f26 · ee59f26
1 parent 5067d8f
commit ee59f26
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/treetime/clock_filter_methods.py b/treetime/clock_filter_methods.py
@@ -76,7 +76,7 @@ def add_outlier_info(z, n, n_info, parent_tau, mu):
     outliers = {}
     mu = tt.clock_model['slope']*tt.data.full_length
     for n in tt.tree.get_terminals():
-        if n.up.up is not None:
+        if n.up.up is None:
             continue # do not label children of the root as bad -- typically a problem with root choice that will be fixed anyway
         n_info = node_info[n.name]
         parent_tau = node_info[n.up.name]['tau']