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@neurobagel

Neurobagel

An ecosystem for distributed dataset harmonization and search.

👋 Welcome to Neurobagel! 🧠🥯

Our goal with the Neurobagel project is to provide a way for researchers and other data users to define and find cohorts of individuals across datasets. Not all useful and important data can be openly shared or are allowed to be uploaded to remote servers. Our approach is to ask data providers to describe their data with metadata, so that we can let others find out about the data without having direct access to them.

We are building tools with the goal of making the annotation, integration, and searching of these easier. This project is still relatively young, but we are excited to get this into the hands of people and hope that it will be useful. The project originated from the ORIGAMI lab with the Douglas Hospital and support from many other projects, including ReproNim and NeuroHub.

For more information, check out our:

Come say hello!

Contacts: Sebastian Urchs and JB Poline

Pinned Loading

  1. annotation_tool annotation_tool Public

    JavaScript 3 7

  2. api api Public

    Python 4 5

  3. query-tool query-tool Public

    User interface for searching across Neurobagel graph

    TypeScript 1 2

  4. bagel-cli bagel-cli Public

    Command line tool for Neurobagel data parsing and annotation

    Python 2 5

  5. documentation documentation Public

    The neurobagel documentation

    JavaScript 10 6

  6. federation-api federation-api Public

    REST API for query federation over multiple Neurobagel graph databases

    Python

Repositories

Showing 10 of 30 repositories
  • upptime Public

    Status dashboard of services hosted directly by Neurobagel

    neurobagel/upptime’s past year of commit activity
    Markdown 0 MIT 0 0 0 Updated Jul 20, 2024
  • bagel-cli Public

    Command line tool for Neurobagel data parsing and annotation

    neurobagel/bagel-cli’s past year of commit activity
    Python 2 MIT 5 19 (3 issues need help) 0 Updated Jul 19, 2024
  • neurobagel/annotation-tool-ai’s past year of commit activity
    Python 1 MIT 0 4 1 Updated Jul 19, 2024
  • tools Public

    Other helpful tools for interfacing with Neurobagel

    neurobagel/tools’s past year of commit activity
    Python 0 MIT 0 3 1 Updated Jul 18, 2024
  • query-tool Public

    User interface for searching across Neurobagel graph

    neurobagel/query-tool’s past year of commit activity
    TypeScript 1 MIT 2 35 (3 issues need help) 1 Updated Jul 18, 2024
  • federation-api Public

    REST API for query federation over multiple Neurobagel graph databases

    neurobagel/federation-api’s past year of commit activity
    Python 0 MIT 0 6 1 Updated Jul 18, 2024
  • api Public
    neurobagel/api’s past year of commit activity
    Python 4 MIT 5 19 1 Updated Jul 18, 2024
  • neurobagel/workflows’s past year of commit activity
    0 MIT 1 12 0 Updated Jul 18, 2024
  • react-bagel Public template
    neurobagel/react-bagel’s past year of commit activity
    TypeScript 0 MIT 0 2 0 Updated Jul 17, 2024
  • ui Public
    neurobagel/ui’s past year of commit activity
    TypeScript 0 MIT 0 2 0 Updated Jul 15, 2024

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