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neurodata · May 20, 2023 · 0397adb · 0397adb
1 parent 871783f
commit 0397adb
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/brainlit/BrainLine/apply_ilastik.py b/brainlit/BrainLine/apply_ilastik.py
@@ -350,7 +350,7 @@ def examine_threshold(
                             name=f"nonsoma false positive area: {area}",
                         )
         elif object_type == "axon":
-            fname_lab = im_fname.split(".")[0] + "-image_3channel_Labels.h5"
+            fname_lab = im_fname[: im_fname.rfind(".")] + "-image_3channel_Labels.h5"
             f = h5py.File(fname_lab, "r")
             gt = f.get("exported_data")
             gt = gt[0, :, :, :]
@@ -587,7 +587,7 @@ def _process_chunk(
         )
         # subprocess.run(["/Applications/ilastik-1.3.3post3-OSX.app/Contents/ilastik-release/run_ilastik.sh", "--headless", "--project=/Users/thomasathey/Documents/mimlab/mouselight/ailey/benchmark_formal/brain3/matt_benchmark_formal_brain3.ilp", fname], stdout=subprocess.PIPE, stderr=subprocess.PIPE)
 
-        fname_prob = str(fname).split(".")[0] + "_Probabilities.h5"
+        fname_prob = str(fname)[: str(fname).rfind(".")] + "_Probabilities.h5"
         with h5py.File(fname_prob, "r") as f:
             pred = f.get("exported_data")
             if object_type == "soma":