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Makefile
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Makefile
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# simple makefile to simplify repetitive build env management tasks under posix
# caution: testing won't work on windows, see README
PYTHON ?= python
PYTESTS ?= pytest
CTAGS ?= ctags
CODESPELL_SKIPS ?= "*.fif,*.eve,*.gz,*.tgz,*.zip,*.mat,*.stc,*.label,*.w,*.bz2,*.annot,*.sulc,*.log,*.local-copy,*.orig_avg,*.inflated_avg,*.gii,*.pyc,*.doctree,*.pickle,*.inv,*.png,*.edf,*.touch,*.thickness,*.nofix,*.volume,*.defect_borders,*.mgh,lh.*,rh.*,COR-*,FreeSurferColorLUT.txt,*.examples,.xdebug_mris_calc,bad.segments,BadChannels,*.hist,empty_file,*.orig,*.js,*.map,*.ipynb,searchindex.dat,plot_*.rst,*.rst.txt,*.html,gdf_encodes.txt,treeple/_lib/*,doc/auto_examples/*"
CODESPELL_DIRS ?= treeple/ doc/ examples/ benchmarks/
all: clean inplace test test-doc
clean-pyc:
find . -name "*.pyc" | xargs rm -f
clean-build:
rm -rf build
rm -rf dist
clean-cache:
find . -name "__pycache__" | xargs rm -rf
clean: clean-build clean-pyc clean-cache
pytest: test
test: in
rm -f .coverage
$(PYTESTS) treeple
test-doc: sample_data testing_data
$(PYTESTS) --doctest-modules --doctest-ignore-import-errors --doctest-glob='*.rst' ./doc/
flake:
@if command -v flake8 > /dev/null; then \
echo "Running flake8"; \
flake8 --count treeple examples; \
else \
echo "flake8 not found, please install it!"; \
exit 1; \
fi;
@echo "flake8 passed"
black:
@if command -v black > /dev/null; then \
echo "Running black"; \
black treeple examples; \
else \
echo "black not found, please install it!"; \
exit 1; \
fi;
@echo "black passed"
isort:
@if command -v isort > /dev/null; then \
echo "Running isort"; \
isort treeple examples doc; \
else \
echo "isort not found, please install it!"; \
exit 1; \
fi;
@echo "isort passed"
codespell: # running manually
@codespell -w -i 3 -q 3 -S $(CODESPELL_SKIPS) --ignore-words=.codespellignore $(CODESPELL_DIRS)
codespell-error: # running on travis
@codespell -i 0 -q 7 -S $(CODESPELL_SKIPS) --ignore-words=.codespellignore $(CODESPELL_DIRS)
pydocstyle:
@echo "Running pydocstyle"
@pydocstyle mne
docstyle: pydocstyle
build-doc:
@echo "Building documentation"
make -C doc/ clean
make -C doc/ html
cd doc/ && make view
build-doc-noplot:
@echo "Building documentation"
make -C doc/ clean
make -C doc/ html-noplot
cd doc/ && make view
run-checks:
isort --check .
black --check treeple examples
flake8 .
mypy ./treeple
@$(MAKE) pydocstyle
@$(MAKE) codespell-error
ruff .
toml-sort ./pyproject.toml --check
yamllint . -c .yamllint.yml --strict
pre-commit:
@pre-commit run -a