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neuromethods

Computational tools for theoretical and systems neuroscience

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  1. fokker-planck-based-spike-rate-models fokker-planck-based-spike-rate-models Public

    Rate model implementations for (adaptive) integrate-and-fire neurons based on the Fokker-Planck equation: (i) numerical (finite volume) solution of the full FP PDE, (ii) low-dim. ODE via spectral d…

    Python 10 8

  2. inference-for-integrate-and-fire-models inference-for-integrate-and-fire-models Public

    Analytical methods for efficient inference of integrate-and-fire circuit models from single-trial spike trains

    Python 9 4

  3. phase-reduction-for-aEIF-neurons phase-reduction-for-aEIF-neurons Public

    Implementation to calculate phase response curves and interaction functions for oscillating adaptive exponential integrate-and-fire neurons.

    MATLAB

  4. extension-for-integrate-and-fire-models extension-for-integrate-and-fire-models Public

    Forked from nigroup/IF_extension

    Extension for integrate-and-fire neuron models to account for the effects of weak electric fields and input filtering caused by the dendrite: a Python implementation. The extension components were …

    Jupyter Notebook

  5. neural-firing-and-cardiac-cycle-duration neural-firing-and-cardiac-cycle-duration Public

    Analysis methods for the relationship between spontaneous neural firing and cardiac cycle duration

    MATLAB

  6. two-compartment-models-and-weak-electric-fields two-compartment-models-and-weak-electric-fields Public

    Analytical methods to study the spiking dynamics of (populations of) two-compartment model neurons in the presence/absence of an extracellular electric field

    Python

Repositories

Showing 7 of 7 repositories
  • inference-for-integrate-and-fire-models Public

    Analytical methods for efficient inference of integrate-and-fire circuit models from single-trial spike trains

    neuromethods/inference-for-integrate-and-fire-models’s past year of commit activity
    Python 9 GPL-3.0 4 0 0 Updated Oct 30, 2019
  • extension-for-integrate-and-fire-models Public Forked from nigroup/IF_extension

    Extension for integrate-and-fire neuron models to account for the effects of weak electric fields and input filtering caused by the dendrite: a Python implementation. The extension components were derived from a ball-and-stick model, see Aspart, Ladenbauer, Obermayer (2016).

    neuromethods/extension-for-integrate-and-fire-models’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated May 14, 2019
  • neural-firing-and-cardiac-cycle-duration Public

    Analysis methods for the relationship between spontaneous neural firing and cardiac cycle duration

    neuromethods/neural-firing-and-cardiac-cycle-duration’s past year of commit activity
    MATLAB 0 GPL-3.0 0 0 0 Updated May 14, 2019
  • two-compartment-models-and-weak-electric-fields Public

    Analytical methods to study the spiking dynamics of (populations of) two-compartment model neurons in the presence/absence of an extracellular electric field

    neuromethods/two-compartment-models-and-weak-electric-fields’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated May 14, 2019
  • neuromethods/inference_for_doubly_stochastic_IF_models’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated May 8, 2019
  • fokker-planck-based-spike-rate-models Public

    Rate model implementations for (adaptive) integrate-and-fire neurons based on the Fokker-Planck equation: (i) numerical (finite volume) solution of the full FP PDE, (ii) low-dim. ODE via spectral decomposition of the FP operator, (iii) low-dim. ODE via a linear-nonlinear cascade semianalytically fit to the FP model.

    neuromethods/fokker-planck-based-spike-rate-models’s past year of commit activity
    Python 10 GPL-3.0 8 0 0 Updated Apr 23, 2019
  • phase-reduction-for-aEIF-neurons Public

    Implementation to calculate phase response curves and interaction functions for oscillating adaptive exponential integrate-and-fire neurons.

    neuromethods/phase-reduction-for-aEIF-neurons’s past year of commit activity
    MATLAB 0 GPL-3.0 0 0 0 Updated Feb 4, 2018

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