Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Ingest Narratives datasets #952

Merged
merged 68 commits into from
Jul 27, 2021
Merged

Ingest Narratives datasets #952

merged 68 commits into from
Jul 27, 2021

Commits on Jun 15, 2021

  1. Add basic narratives json dataset config

    @adelavega
    adelavega committed Jun 15, 2021
    Configuration menu
    Copy the full SHA
    edc3bc1 View commit details
    Browse the repository at this point in the history

Commits on Jun 29, 2021

  1. Inital pass at setup function

    @adelavega
    adelavega committed Jun 29, 2021
    Configuration menu
    Copy the full SHA
    7df0cb5 View commit details
    Browse the repository at this point in the history

  2. Finish setup_dataset

    @adelavega
    adelavega committed Jun 29, 2021
    Configuration menu
    Copy the full SHA
    6a950eb View commit details
    Browse the repository at this point in the history

Commits on Jun 30, 2021

  1. str Path

    @adelavega
    adelavega committed Jun 30, 2021
    Configuration menu
    Copy the full SHA
    a432592 View commit details
    Browse the repository at this point in the history

  2. Use correct path

    @adelavega
    adelavega committed Jun 30, 2021
    Configuration menu
    Copy the full SHA
    36ac72e View commit details
    Browse the repository at this point in the history

  3. output json

    @adelavega
    adelavega committed Jun 30, 2021
    Configuration menu
    Copy the full SHA
    27b036f View commit details
    Browse the repository at this point in the history

  4. Don't add preprocesseD

    @adelavega
    adelavega committed Jun 30, 2021
    Configuration menu
    Copy the full SHA
    763d884 View commit details
    Browse the repository at this point in the history

  5. Correct suffix

    @adelavega
    adelavega committed Jun 30, 2021
    Configuration menu
    Copy the full SHA
    e580301 View commit details
    Browse the repository at this point in the history

  6. Index output json

    @adelavega
    adelavega committed Jun 30, 2021
    Configuration menu
    Copy the full SHA
    d0ef85d View commit details
    Browse the repository at this point in the history

  7. Get correct summary

    @adelavega
    adelavega committed Jun 30, 2021
    Configuration menu
    Copy the full SHA
    379caa4 View commit details
    Browse the repository at this point in the history

Commits on Jul 2, 2021

  1. TMP: Set pybids to master

    @adelavega
    adelavega committed Jul 2, 2021
    Configuration menu
    Copy the full SHA
    274595a View commit details
    Browse the repository at this point in the history

Commits on Jul 3, 2021

  1. Add to manage

    @adelavega
    adelavega committed Jul 3, 2021
    Configuration menu
    Copy the full SHA
    fc776cd View commit details
    Browse the repository at this point in the history

  2. Seperate add_dataset to new function

    @adelavega
    adelavega committed Jul 3, 2021
    Configuration menu
    Copy the full SHA
    e2e5f68 View commit details
    Browse the repository at this point in the history

  3. Update reingest, and arguments

    @adelavega
    adelavega committed Jul 3, 2021
    Configuration menu
    Copy the full SHA
    4381433 View commit details
    Browse the repository at this point in the history

Commits on Jul 6, 2021

  1. Rename path argument

    @adelavega
    adelavega committed Jul 6, 2021
    Configuration menu
    Copy the full SHA
    974139e View commit details
    Browse the repository at this point in the history

  2. Change name to raw address

    @adelavega
    adelavega committed Jul 6, 2021
    Configuration menu
    Copy the full SHA
    b6d3644 View commit details
    Browse the repository at this point in the history

  3. Change name of summary

    @adelavega
    adelavega committed Jul 6, 2021
    Configuration menu
    Copy the full SHA
    a0bf1b5 View commit details
    Browse the repository at this point in the history

  4. Relative symlink

    @adelavega
    adelavega committed Jul 6, 2021
    Configuration menu
    Copy the full SHA
    40f4f60 View commit details
    Browse the repository at this point in the history

Commits on Jul 7, 2021

  1. count function

    @adelavega
    adelavega committed Jul 7, 2021
    Configuration menu
    Copy the full SHA
    bd90ddc View commit details
    Browse the repository at this point in the history

  2. local path Pathlib

    @adelavega
    adelavega committed Jul 7, 2021
    Configuration menu
    Copy the full SHA
    5f1552a View commit details
    Browse the repository at this point in the history

  3. Open to write

    @adelavega
    adelavega committed Jul 7, 2021
    Configuration menu
    Copy the full SHA
    2d13ba4 View commit details
    Browse the repository at this point in the history

Commits on Jul 9, 2021

  1. Add NNdb to bib

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    5d9ea2a View commit details
    Browse the repository at this point in the history

  2. Add logic to add to bib upon ingestion

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    5e8a51c View commit details
    Browse the repository at this point in the history

  3. Use 0.13.1 custom patch

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    40e73ff View commit details
    Browse the repository at this point in the history

  4. Change flag to skip preproc

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    e22f0f2 View commit details
    Browse the repository at this point in the history

  5. Get dataset desc

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    136cff3 View commit details
    Browse the repository at this point in the history

  6. KeyError not ValueError

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    013b9db View commit details
    Browse the repository at this point in the history

  7. Add kwargs to setup dataset

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    650c79f View commit details
    Browse the repository at this point in the history

  8. Attemp to fix tests

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    8b22006 View commit details
    Browse the repository at this point in the history

  9. Add datasets dir

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    b3b7cf7 View commit details
    Browse the repository at this point in the history

  10. Return dataset_id

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    d68b14b View commit details
    Browse the repository at this point in the history

  11. Rename summary

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    b88d328 View commit details
    Browse the repository at this point in the history

  12. Return dataset_id

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    a38365a View commit details
    Browse the repository at this point in the history

  13. Correct stim count

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    4568358 View commit details
    Browse the repository at this point in the history

  14. Fix tests

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    ef96116 View commit details
    Browse the repository at this point in the history

  15. Fix dataset name

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    ddd2251 View commit details
    Browse the repository at this point in the history

  16. Fix dataset name 2

    @adelavega
    adelavega committed Jul 9, 2021
    Configuration menu
    Copy the full SHA
    4511a17 View commit details
    Browse the repository at this point in the history

Commits on Jul 10, 2021

  1. Merge branch 'master' into ingest_narratives

    @adelavega
    adelavega committed Jul 10, 2021
    Configuration menu
    Copy the full SHA
    8ebf433 View commit details
    Browse the repository at this point in the history

Commits on Jul 12, 2021

  1. use get_metadata()

    @adelavega
    adelavega committed Jul 12, 2021
    Configuration menu
    Copy the full SHA
    2892235 View commit details
    Browse the repository at this point in the history

  2. Get desc

    @adelavega
    adelavega committed Jul 12, 2021
    Configuration menu
    Copy the full SHA
    35df67d View commit details
    Browse the repository at this point in the history

  3. Reverse backend and frontend tests

    @adelavega
    adelavega committed Jul 12, 2021
    Configuration menu
    Copy the full SHA
    49a24d3 View commit details
    Browse the repository at this point in the history

  4. Auto get tsv and jsons

    @adelavega
    adelavega committed Jul 12, 2021
    Configuration menu
    Copy the full SHA
    4e7af0c View commit details
    Browse the repository at this point in the history

  5. Add sentry uri to config

    @adelavega
    adelavega committed Jul 12, 2021
    Configuration menu
    Copy the full SHA
    b3c161e View commit details
    Browse the repository at this point in the history

Commits on Jul 13, 2021

  1. Force reingest

    @adelavega
    adelavega committed Jul 13, 2021
    Configuration menu
    Copy the full SHA
    01d750f View commit details
    Browse the repository at this point in the history

  2. Preproc path not address

    @adelavega
    adelavega committed Jul 13, 2021
    Configuration menu
    Copy the full SHA
    f22f39d View commit details
    Browse the repository at this point in the history

  3. Optimize rebuilding of layout

    @adelavega
    adelavega committed Jul 13, 2021
    Configuration menu
    Copy the full SHA
    a843d2d View commit details
    Browse the repository at this point in the history

  4. Fix typo

    @adelavega
    adelavega committed Jul 13, 2021
    Configuration menu
    Copy the full SHA
    4ed3935 View commit details
    Browse the repository at this point in the history

  5. Typo 2

    @adelavega
    adelavega committed Jul 13, 2021
    Configuration menu
    Copy the full SHA
    2e74f88 View commit details
    Browse the repository at this point in the history

Commits on Jul 14, 2021

  1. fix age map

    @adelavega
    adelavega committed Jul 14, 2021
    Configuration menu
    Copy the full SHA
    f9a7380 View commit details
    Browse the repository at this point in the history

  2. Vals not val

    @adelavega
    adelavega committed Jul 14, 2021
    Configuration menu
    Copy the full SHA
    fa8a0a0 View commit details
    Browse the repository at this point in the history

  3. if vals

    @adelavega
    adelavega committed Jul 14, 2021
    Configuration menu
    Copy the full SHA
    c7fa8b5 View commit details
    Browse the repository at this point in the history

  4. TMP Print summarY

    @adelavega
    adelavega committed Jul 14, 2021
    Configuration menu
    Copy the full SHA
    4cc565a View commit details
    Browse the repository at this point in the history

Commits on Jul 15, 2021

  1. Ignore TSV and download json sidecars

    @adelavega
    adelavega committed Jul 15, 2021
    Configuration menu
    Copy the full SHA
    e95d442 View commit details
    Browse the repository at this point in the history

  2. Ignore regressors

    @adelavega
    adelavega committed Jul 15, 2021
    Configuration menu
    Copy the full SHA
    dd4156d View commit details
    Browse the repository at this point in the history

  3. Add auto fetch

    @adelavega
    adelavega committed Jul 15, 2021
    Configuration menu
    Copy the full SHA
    1e85a99 View commit details
    Browse the repository at this point in the history

  4. config sentry not null

    @adelavega
    adelavega committed Jul 15, 2021
    Configuration menu
    Copy the full SHA
    e5eabb4 View commit details
    Browse the repository at this point in the history

  5. Set to string, Sentry config value

    @adelavega
    adelavega committed Jul 15, 2021
    Configuration menu
    Copy the full SHA
    7ec24b6 View commit details
    Browse the repository at this point in the history

  6. Get path

    @adelavega
    adelavega committed Jul 15, 2021
    Configuration menu
    Copy the full SHA
    fe02bc9 View commit details
    Browse the repository at this point in the history

  7. Update predictor schema

    @adelavega
    adelavega committed Jul 15, 2021
    Configuration menu
    Copy the full SHA
    8167186 View commit details
    Browse the repository at this point in the history

Commits on Jul 22, 2021

  1. Update config file

    @adelavega
    adelavega committed Jul 22, 2021
    Configuration menu
    Copy the full SHA
    46d20f9 View commit details
    Browse the repository at this point in the history

  2. Merge remote-tracking branch 'origin/master' into ingest_narratives

    @adelavega
    adelavega committed Jul 22, 2021
    Configuration menu
    Copy the full SHA
    a7177a7 View commit details
    Browse the repository at this point in the history

Commits on Jul 23, 2021

  1. Refactor extract_from_json file to only encompass extraction

    @adelavega
    adelavega committed Jul 23, 2021
    Configuration menu
    Copy the full SHA
    6187cf1 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'ingest_narratives' of github.com:neuroscout/neuroscout … 

    …into ingest_narratives
    @adelavega
    adelavega committed Jul 23, 2021
    Configuration menu
    Copy the full SHA
    2440d05 View commit details
    Browse the repository at this point in the history

  3. Migrate all dataset configuration files

    @adelavega
    adelavega committed Jul 23, 2021
    Configuration menu
    Copy the full SHA
    0edd5dd View commit details
    Browse the repository at this point in the history

  4. Update active dataset count

    @adelavega
    adelavega committed Jul 23, 2021
    Configuration menu
    Copy the full SHA
    7d85f69 View commit details
    Browse the repository at this point in the history

Commits on Jul 25, 2021

  1. Fix typo

    @adelavega
    adelavega committed Jul 25, 2021
    Configuration menu
    Copy the full SHA
    a2f710b View commit details
    Browse the repository at this point in the history

  2. Fix cypress backend setup

    @adelavega
    adelavega committed Jul 25, 2021
    Configuration menu
    Copy the full SHA
    6ef6226 View commit details
    Browse the repository at this point in the history

Commits on Jul 26, 2021

  1. Add auditory extractor group

    @adelavega
    adelavega committed Jul 26, 2021
    Configuration menu
    Copy the full SHA
    e61b95a View commit details
    Browse the repository at this point in the history