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Remove resample argument from IBMA estimators #823

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merged 10 commits into from Aug 22, 2023

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JulioAPeraza
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Related to #817.

Currently if resample=False we get an error if at least one image has shape/affines different from the mask. In this case, users will have to run an IBMA again with resample=True even if most images don't need to be resampled.

Changes proposed in this pull request:

  • In this PR we remove that burden from users and perform the resampling only if the shape/affines are different.
  • Also, we are removing the memory_limit argument, given that use_memmap decorator is not being used by IBMA estimators.

@JulioAPeraza JulioAPeraza added enhancement New feature or request ibma Issues/PRs pertaining to image-based meta-analysis labels Aug 16, 2023
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codecov bot commented Aug 16, 2023

Codecov Report

Patch coverage: 100.00% and project coverage change: -0.02% ⚠️

Comparison is base (e59a083) 88.68% compared to head (1843993) 88.67%.
Report is 1 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #823      +/-   ##
==========================================
- Coverage   88.68%   88.67%   -0.02%     
==========================================
  Files          47       47              
  Lines        6026     6020       -6     
==========================================
- Hits         5344     5338       -6     
  Misses        682      682              
Files Changed Coverage Δ
nimare/meta/ibma.py 99.57% <100.00%> (-0.02%) ⬇️

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@JulioAPeraza JulioAPeraza mentioned this pull request Aug 22, 2023
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@jdkent jdkent left a comment

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LGTM!

@jdkent jdkent merged commit dd8f89c into neurostuff:main Aug 22, 2023
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2 participants