Update Platform API endpoint (#4855)

Signed-off-by: Dr Marco Claudio De La Pierre <marco.delapierre@gmail.com> Signed-off-by: Paolo Di Tommaso <paolo.ditommaso@gmail.com> Co-authored-by: Paolo Di Tommaso <paolo.ditommaso@gmail.com> Signed-off-by: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
nextflow-io · May 28, 2024 · 04cedce · 04cedce
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diff --git a/docs/cli.md b/docs/cli.md
@@ -1263,8 +1263,8 @@ The `run` command is used to execute a local pipeline script or remote pipeline
 `-with-timeline` (`timeline-<timestamp>.html`)
 : Create workflow execution timeline.
 
-`-with-tower` (`https://api.tower.nf`)
-: Monitor workflow execution with [Tower](https://cloud.tower.nf/).
+`-with-tower` (`https://api.cloud.seqera.io`)
+: Monitor workflow execution with [Seqera Platform](https://seqera.io/) (formerly Tower Cloud).
 
 `-with-trace` (`trace-<timestamp>.txt`)
 : Create workflow execution trace file.
@@ -1328,7 +1328,7 @@ The `run` command is used to execute a local pipeline script or remote pipeline
   $ nextflow run main.nf -entry workflow_A
   ```
 
-- Execute a pipeline with integrated monitoring in [Tower](https://cloud.tower.nf).
+- Execute a pipeline with integrated monitoring in [Seqera Platform](https://seqera.io).
 
   ```console
   $ nextflow run nextflow-io/hello -with-tower

diff --git a/docs/config.md b/docs/config.md
@@ -1391,20 +1391,20 @@ The following settings are available:
 
 ### Scope `tower`
 
-The `tower` scope controls the settings for the [Nextflow Tower](https://tower.nf) monitoring and tracing service.
+The `tower` scope controls the settings for the [Seqera Platform](https://seqera.io) (formerly Tower Cloud).
 
 The following settings are available:
 
 `tower.accessToken`
 : The unique access token specific to your account on an instance of Tower.
 
-  Your `accessToken` can be obtained from your Tower instance in the [Tokens page](https://tower.nf/tokens).
+  Your `accessToken` can be obtained from your Seqera Platform instance in the [Tokens page](https://cloud.seqera.io/tokens).
 
 `tower.enabled`
 : When `true` Nextflow sends the workflow tracing and execution metrics to the Nextflow Tower service (default: `false`).
 
 `tower.endpoint`
-: The endpoint of your Tower deployment (default: `https://tower.nf`).
+: The endpoint of your Seqera Platform instance (default: `https://api.cloud.seqera.io`).
 
 `tower.workspaceId`
 : The ID of the Tower workspace where the run should be added (default: the launching user personal workspace).

diff --git a/docs/google.md b/docs/google.md
@@ -200,7 +200,7 @@ process.scratch = false
 tower.accessToken = '<YOUR ACCESS TOKEN>'
 ```
 
-The [Tower](https://cloud.tower.nf) access token is optional, but it enables higher API rate limits for the {ref}`wave-page` service required by Fusion.
+The [Seqera Platform](https://seqera.io) access token is optional, but it enables higher API rate limits for the {ref}`wave-page` service required by Fusion.
 
 By default, Fusion mounts a local SSD disk to the VM at `/tmp`, using a machine type that can attach local SSD disks. If you specify your own machine type or machine series, they should be able to attach local SSD disks, otherwise the job scheduling will fail.
 

diff --git a/docs/plugins.md b/docs/plugins.md
@@ -13,8 +13,8 @@ The following functionalities are provided via plugin components, and they make
 - `nf-cloudcache`: Support for the cloud cache (see `NXF_CLOUDCACHE_PATH` under {ref}`config-env-vars`).
 - `nf-console`: Implement Nextflow [REPL console](https://www.nextflow.io/blog/2015/introducing-nextflow-console.html).
 - `nf-ga4gh`: Support [GA4GH APIs](https://www.ga4gh.org/).
-- `nf-google`: Support for Google cloud.
-- `nf-tower`: Support for [Tower](https://tower.nf) cloud platform.
+- `nf-google`: Support for Google Cloud.
+- `nf-tower`: Support for [Seqera Platform](https://seqera.io) (formerly Tower Cloud).
 - `nf-wave`: Support for [Wave containers](https://seqera.io/wave/) service.
 
 

diff --git a/modules/nextflow/src/main/groovy/nextflow/config/ConfigBuilder.groovy b/modules/nextflow/src/main/groovy/nextflow/config/ConfigBuilder.groovy
@@ -689,7 +689,7 @@ class ConfigBuilder {
             if( cmdRun.withTower != '-' )
                 config.tower.endpoint = cmdRun.withTower
             else if( !config.tower.endpoint )
-                config.tower.endpoint = 'https://api.tower.nf'
+                config.tower.endpoint = 'https://api.cloud.seqera.io'
         }
 
         // -- set wave options

diff --git a/modules/nextflow/src/test/groovy/nextflow/config/ConfigBuilderTest.groovy b/modules/nextflow/src/test/groovy/nextflow/config/ConfigBuilderTest.groovy
@@ -1107,7 +1107,7 @@ class ConfigBuilderTest extends Specification {
         then:
         config.tower instanceof Map
         config.tower.enabled
-        config.tower.endpoint == 'https://api.tower.nf'
+        config.tower.endpoint == 'https://api.cloud.seqera.io'
     }
 
     def 'should set wave options' () {

diff --git a/plugins/nf-tower/src/main/io/seqera/tower/plugin/TowerClient.groovy b/plugins/nf-tower/src/main/io/seqera/tower/plugin/TowerClient.groovy
@@ -56,7 +56,7 @@ import nextflow.util.Threads
 @CompileStatic
 class TowerClient implements TraceObserver {
 
-    static final public String DEF_ENDPOINT_URL = 'https://api.tower.nf'
+    static final public String DEF_ENDPOINT_URL = 'https://api.cloud.seqera.io'
 
     static private final int TASKS_PER_REQUEST = 100
 
@@ -214,6 +214,10 @@ class TowerClient implements TraceObserver {
      * @return The requested url or the default url, if invalid
      */
     protected String checkUrl(String url){
+        // report a warning for legacy endpoint
+        if( url.contains('https://api.tower.nf') ) {
+            log.warn "The endpoint `https://api.tower.nf` is deprecated - Please use `https://api.cloud.seqera.io` instead"
+        }
         if( url =~ "^(https|http)://[-a-zA-Z0-9+&@#/%?=~_|!:,.;]*[-a-zA-Z0-9+&@#/%=~_|]" ) {
             while( url.endsWith('/') )
                 url = url[0..-2]

diff --git a/plugins/nf-wave/src/main/io/seqera/wave/plugin/config/TowerConfig.groovy b/plugins/nf-wave/src/main/io/seqera/wave/plugin/config/TowerConfig.groovy
@@ -50,7 +50,7 @@ class TowerConfig {
     private String endpoint0(Map opts, Map<String,String> env) {
         def result = opts.endpoint as String
         if( !result || result=='-' )
-            result = env.get('TOWER_API_ENDPOINT') ?: 'https://api.tower.nf'
+            result = env.get('TOWER_API_ENDPOINT') ?: 'https://api.cloud.seqera.io'
         return result.stripEnd('/')
     }
 

diff --git a/plugins/nf-wave/src/test/io/seqera/wave/plugin/config/TowerConfigTest.groovy b/plugins/nf-wave/src/test/io/seqera/wave/plugin/config/TowerConfigTest.groovy
@@ -118,12 +118,12 @@ class TowerConfigTest extends Specification {
         when:
         config = new TowerConfig([:], [:])
         then:
-        config.endpoint == 'https://api.tower.nf'
+        config.endpoint == 'https://api.cloud.seqera.io'
 
         when:
         config = new TowerConfig([endpoint:'-'], [:])
         then:
-        config.endpoint == 'https://api.tower.nf'
+        config.endpoint == 'https://api.cloud.seqera.io'
 
         when:
         config = new TowerConfig([endpoint:'http://foo.com'], [:])