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Unexpected config selector warning #1167

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drpatelh opened this issue Jun 4, 2019 · 1 comment
Closed

Unexpected config selector warning #1167

drpatelh opened this issue Jun 4, 2019 · 1 comment
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@drpatelh
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drpatelh commented Jun 4, 2019

Bug report

(Please follow this template replacing the text between parentheses with the requested information)

Expected behavior and actual behavior

This warning should not be produced when running the pipeline:
WARN: There's no process matching config selector: get_software_versions

Steps to reproduce the problem

nextflow run nf-core/chipseq -profile test,docker -r dev

Program output

Environment

  • Nextflow version: [19.05.0-edge]
  • Java version: [1.8.0_172]
  • Operating system: [Linux]

Additional context

The warning isnt generated by Nextflow v0.32.0 but is by Nextflow 19.05.0-edge.

Warning disappears if I comment out these lines:
https://github.com/nf-core/chipseq/blob/83dc9cb9c5149cafbae06576199aff657c4830e1/conf/base.config#L41-L43

The process does exist:
https://github.com/nf-core/chipseq/blob/83dc9cb9c5149cafbae06576199aff657c4830e1/main.nf#L1377

@pditommaso
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Good spot!

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