scratchDir is overwritten by TMPDIR env variable

[pauca]

if TMPDIR is set, scratchDir gets overwriten by TMPDIR

to reproduce

c1 = Channel.from( 1)
process A {
    scratch '/home/myuser'
    executor 'sge'
    input:
    val c1   
    output:
    file "out_scratch_dir.txt" into aout
    script:
    """
    touch out_scratch_dir.txt
    echo \"PWD `pwd` \" >> out_scratch_dir.txt
    """
}

[pditommaso]

I've uploaded a snapshot fixing this problem. You can use it defining the following variable in your env NXF_VER=0.20.0-SNAPSHOT

[pauca]

Great!
Thanks

2016-06-06 14:51 GMT+02:00 Paolo Di Tommaso notifications@github.com:

I've uploaded a snapshot fixing this problem. You can use it defining the
following variable in your env NXF_VER=0.20.0-SNAPSHOT

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