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Per process containers not working with -with-docker option #39

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emi80 opened this issue Mar 25, 2015 · 0 comments
Closed

Per process containers not working with -with-docker option #39

emi80 opened this issue Mar 25, 2015 · 0 comments

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@emi80
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emi80 commented Mar 25, 2015

Given the example pipeline and configuration below:

// test.nf
process test {
    """
    echo Test 
    """
}
// nextflow.config
process {
    echo = true

    $test.container = 'debian'
}

The following error message is displayed:

$ nextflow run test.nf -with-docker
N E X T F L O W  ~  version 0.12.5
You request to run with Docker but no image has been specified
@emi80 emi80 changed the title Per process containers not working with -with-docker option Per process containers not working with -with-docker option Mar 25, 2015
@emi80 emi80 changed the title Per process containers not working with -with-docker option Per process containers not working with -with-docker option Mar 25, 2015
@emi80 emi80 closed this as completed in ea802f9 Apr 8, 2015
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