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Nextflow history does not include apostrophes #405

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evanfloden opened this issue Jul 19, 2017 · 1 comment
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Nextflow history does not include apostrophes #405

evanfloden opened this issue Jul 19, 2017 · 1 comment
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@evanfloden
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When running:

cat .nextflow/history

the result does not have the apostrophes of the original command.

E.g.

2017-07-19 13:47:01 - gigantic_heisenberg - ea91064aa7974d63ed94dc25e8a314c5 1000d667-ac2a-468d-a861-f8842224a84e nextflow run kallisto.nf —reads=/data/*_read{1,2}.fastq.gz

Due to the required glob expansion in --reads, this makes it not possible to copy/paste from history.

pditommaso added a commit that referenced this issue Dec 7, 2018
This commit fixed the log history so that
command line options containing wildcards and blank
characters are properly escaped, so that the command
can be copied and pasted for lazy people :)

Moreover prevents empty cli as for #965
@pditommaso pditommaso added this to the v19.1.0 milestone Dec 7, 2018
@pditommaso
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Included in version 18.12.0-edge.

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