Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

containers docs: fixed note on singularity default command #4825

Merged
merged 1 commit into from
Mar 19, 2024
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
3 changes: 1 addition & 2 deletions docs/container.md
Original file line number Diff line number Diff line change
Expand Up @@ -585,8 +585,7 @@ Nextflow automatically mounts the required host paths in the container. To re-en
:::

:::{versionchanged} 23.09.0-edge
Nextflow uses the command `run` to carry out the execution of Singularity containers instead of the `exec` command.
To re-enable the old behavior, set the environment variable `NXF_SINGULARITY_RUN_COMMAND` to `exec`.
The execution command for Singularity/Apptainer containers can be set to `run` by means of the environment variable `NXF_SINGULARITY_RUN_COMMAND` (default command is `exec`).
:::

### Multiple containers
Expand Down