Project 7: Nextflow modules, components and data plugins

[evanfloden]

Nextflow modules, components and data plugins

Implement and expand on and the ideas from the repository here.

• Nextflow modules could encapsulate the definitions of similar tools, referred to as components.

• Each module would be made of components which could share the same data input/output types.

• Individual components would contain their own specific commands and execution environments (containers).

• Implement mechanisms for downloading/caching data from sources relevant to the module.

Example Module readMapping

Example Component kallisto

Data:

Any data relevant to the modules developed.

Project Lead:

Evan Floden (@skptic)

[viklund]

I'm interested in this one.

[evanfloden]

Repo for CWL tool to NF process: https://github.com/viklund/CwlCmd2nf