format file-path-pattern #118
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
mirpedrol
approved these changes
Oct 18, 2023
| } | ||
| ArrayList files = Nextflow.file(subject) as ArrayList | ||
| ArrayList errors = [] | ||
| println("${subject}: ${files.size()}") |
| if(format) { | ||
| if(format == "file-path-pattern") { | ||
| def ArrayList inputFiles = Nextflow.file(input) as ArrayList | ||
| return inputFiles |
There was a problem hiding this comment.
These files will be added to the channel in an array if I understood well, we should document this
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Fixes #100
Adds a new format type called
file-path-patternwhich will validate every file found using the globbing pattern in the parameter. Support for globs has also been added to the samplesheet converter, which will now create a list with the files fetched using that glob pattern