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Address Biopython deprecation warnings #1379

Merged
merged 3 commits into from Dec 26, 2023
Merged

Address Biopython deprecation warnings #1379

merged 3 commits into from Dec 26, 2023

Commits on Dec 26, 2023

  1. Ensure Biopython deprecation warnings are emitted 

    These are useful but suppressed by BCBio.GFF as of version 0.7.0. See
issue linked in changes.
    @victorlin
    victorlin committed Dec 26, 2023
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  2. Move strand argument from SeqFeature to FeatureLocation 

    This was deprecated in Biopython 1.80 and removed in 1.82.¹

¹ <https://github.com/biopython/biopython/blob/biopython-182/DEPRECATED.rst>
    @victorlin
    victorlin committed Dec 26, 2023
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  3. Update changelog

    @victorlin
    victorlin committed Dec 26, 2023
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