This section describes the files produced by Nextclade Web and Nextclade CLI run subcommand.
You can download these files from Nextclade Web, after completing an analysis run, using the "Export" dialog.
You can request one or multiple output files from Nextclade CLI by providing paths into a family of output arguments to the run subcommand (they start with --output-).
01-all 02-nuc-alignment 03-translations 04-results-tsv 05-results-json 06-tree errors-and-warnings compression