Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add "--start" and "--end" arguments to newreference.py to allow for creating subgenic trees #58

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Add "--start" and "--end" arguments to newreference.py to allow for creating subgenic trees #58

wants to merge 1 commit into from

Commits on Mar 19, 2024

  1. Add start and end flags to newreference.py to allow for creating subg… 

    …enic phylogenetic trees

Adds "--start" and "--end" arguments to provide 0-based start and end positions
respective to a "--gene" of interest.

Since the GenBank sequences can contain extra sequences off the end of the polyprotein,
a the start and end positions are relative to the gene of interest was deemed more stable.
    @j23414
    j23414 committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    13ce1a9 View commit details
    Browse the repository at this point in the history