Merge pull request #721 from d4straub/fix-groovyjarjarantlr4.v4.runti…

…me.LexerNoViableAltException Fix groovyjarjarantlr4.v4.runtime.LexerNoViableAltException
nf-core · Mar 26, 2024 · a9a6d82 · a9a6d82
2 parents c828ef4 + 7a27dc4
commit a9a6d82
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -19,6 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#715](https://github.com/nf-core/ampliseq/pull/715) - Fix filtering vsearch clusters for high number of clusters
 - [#717](https://github.com/nf-core/ampliseq/pull/717) - Fix edge case for sorting file names by using radix method
 - [#718](https://github.com/nf-core/ampliseq/pull/718) - Require a minimum sequence length of 50bp for taxonomic classifcation after using ITSx
+- [#721](https://github.com/nf-core/ampliseq/pull/721) - Fix error `unknown recognition error type: groovyjarjarantlr4.v4.runtime.LexerNoViableAltException` caused by a missing `\` in nf-core module `pigz/uncompress` (which had no consequences but was confusing)
 
 ### `Dependencies`
 

diff --git a/modules.json b/modules.json
@@ -79,7 +79,8 @@
                     "pigz/uncompress": {
                         "branch": "master",
                         "git_sha": "4ef7becf6a2bbc8df466885d10b4051d1f318a6a",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/pigz/uncompress/pigz-uncompress.diff"
                     },
                     "untar": {
                         "branch": "master",

diff --git a/modules/nf-core/pigz/uncompress/main.nf b/modules/nf-core/pigz/uncompress/main.nf
diff --git a/modules/nf-core/pigz/uncompress/pigz-uncompress.diff b/modules/nf-core/pigz/uncompress/pigz-uncompress.diff