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Sample names same as read file basenames #306
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Nice that you added the test_single, however, it is not executed yet. You could add it to ampliseq/.github/workflows/ci.yml.
Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com>
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LGTM!
Den tors 29 juli 2021 kl 09:16 skrev Daniel Straub ***@***.***
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***@***.**** commented on this pull request.
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In conf/test_single.config
<#306 (comment)>:
> + //this is to remove low abundance ASVs to reduce runtime of downstream processes
+ min_samples = 2
+ min_frequency = 10
Please check the line profile: [test_multi, test_pacbio_its,
test_doubleprimers, test_iontorrent] that is linked above.
Right, I missed this comment before I merged. I'll do a small PR.
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PR checklist
scrape_software_versions.py
nf-core lint .
).nextflow run . -profile test,docker
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).