nf-core · JoseEspinosa · Apr 2, 2024 · Mar 6, 2024 · Mar 6, 2024 · Mar 20, 2024
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,8 +7,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Enhancements & fixes
 
-- [[#327](https://github.com/nf-core/atacseq/issues/327)]Consistently support `.csi` indices as alternative to `.bai` to allow SAMTOOLS_INDEX to be used with the `-c` flag.
+- [[#327](https://github.com/nf-core/atacseq/issues/327)] - Consistently support `.csi` indices as alternative to `.bai` to allow SAMTOOLS_INDEX to be used with the `-c` flag.
 - Updated pipeline template to [nf-core/tools 2.10](https://github.com/nf-core/tools/releases/tag/2.10)
+- [[#356](https://github.com/nf-core/atacseq/issues/356)] - Get rid of the `lib` folder and rearrange the pipeline accordingly.
 
 ## [[2.1.2](https://github.com/nf-core/atacseq/releases/tag/2.1.2)] - 2022-08-07
 

diff --git a/lib/NfcoreTemplate.groovy b/lib/NfcoreTemplate.groovy
diff --git a/lib/Utils.groovy b/lib/Utils.groovy
diff --git a/lib/WorkflowAtacseq.groovy b/lib/WorkflowAtacseq.groovy
diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy